Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004720A_C01 KMC004720A_c01
(679 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC38395.1| ferredoxin I [Solanum tuberosum] 205 5e-52
sp|Q43517|FER1_LYCES Ferredoxin I, chloroplast precursor gi|7430... 204 9e-52
sp|O04683|FER1_MESCR Ferredoxin I, chloroplast precursor gi|7430... 198 5e-50
gb|AAD02175.1| ferredoxin-like protein [Capsicum annuum] 196 2e-49
sp|P09911|FER1_PEA Ferredoxin I, chloroplast precursor gi|65740|... 194 7e-49
>emb|CAC38395.1| ferredoxin I [Solanum tuberosum]
Length = 144
Score = 205 bits (521), Expect = 5e-52
Identities = 104/142 (73%), Positives = 114/142 (80%), Gaps = 5/142 (3%)
Frame = -1
Query: 673 AFSGATVSTSFLRRQPVA----AFPNVGQVMFGVKGGSRGGRVT-MAAYKVKLITPEGPQ 509
+ SG +STSFL R+PV A NVG+ +FG+K G R GR+T MA+YKVKLITP+GP
Sbjct: 3 SISGTMISTSFLPRKPVVTSLKAISNVGEALFGLKSG-RNGRITCMASYKVKLITPDGPI 61
Query: 508 EFECPDDVYILDQAEEVGIDIPYSCRAGSCSSCAGKVVEGAVDQSDGSFLDDDQVEGGFV 329
EFECPDDVYILDQAEE G D+PYSCRAGSCSSCAGKV G VDQSDG FLDDDQ GFV
Sbjct: 62 EFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGKFLDDDQEAAGFV 121
Query: 328 LTCVAYPKSDVVIETHKEEELT 263
LTCVAYPK DV IETHKEEELT
Sbjct: 122 LTCVAYPKCDVTIETHKEEELT 143
>sp|Q43517|FER1_LYCES Ferredoxin I, chloroplast precursor gi|7430744|pir||T07175
ferredoxin [2Fe-2S] I precursor, chloroplast - tomato
gi|1418982|emb|CAA99756.1| ferredoxin-I [Lycopersicon
esculentum]
Length = 144
Score = 204 bits (519), Expect = 9e-52
Identities = 103/142 (72%), Positives = 115/142 (80%), Gaps = 5/142 (3%)
Frame = -1
Query: 673 AFSGATVSTSFLRRQPVA----AFPNVGQVMFGVKGGSRGGRVT-MAAYKVKLITPEGPQ 509
+ SG +STSFL R+P A NVG+ +FG+K G R GR+T MA+YKVKLITPEGP
Sbjct: 3 SISGTMISTSFLPRKPAVTSLKAISNVGEALFGLKSG-RNGRITCMASYKVKLITPEGPI 61
Query: 508 EFECPDDVYILDQAEEVGIDIPYSCRAGSCSSCAGKVVEGAVDQSDGSFLDDDQVEGGFV 329
EFECPDDVYILDQAEE G D+PYSCRAGSCSSCAGKV G+VDQSDG+FLD+DQ GFV
Sbjct: 62 EFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFV 121
Query: 328 LTCVAYPKSDVVIETHKEEELT 263
LTCVAYPK DV IETHKEEELT
Sbjct: 122 LTCVAYPKGDVTIETHKEEELT 143
>sp|O04683|FER1_MESCR Ferredoxin I, chloroplast precursor gi|7430751|pir||T12417
ferredoxin [2Fe-2S] I precursor - common ice plant
gi|2213869|gb|AAB61593.1| ferredoxin I precursor
[Mesembryanthemum crystallinum]
Length = 148
Score = 198 bits (504), Expect = 5e-50
Identities = 100/141 (70%), Positives = 114/141 (79%), Gaps = 4/141 (2%)
Frame = -1
Query: 673 AFSGATVSTSFLRRQP--VAAFP-NVGQVMFGVKGGSRGGRVT-MAAYKVKLITPEGPQE 506
A SGAT+ST+F + P AA P NVG+ +FG+K + GRVT MAAYKV L+TPEG QE
Sbjct: 7 ALSGATMSTAFAPKTPPMTAALPTNVGRALFGLKSSASRGRVTAMAAYKVTLVTPEGKQE 66
Query: 505 FECPDDVYILDQAEEVGIDIPYSCRAGSCSSCAGKVVEGAVDQSDGSFLDDDQVEGGFVL 326
ECPDDVYILD AEE GID+PYSCRAGSCSSCAGKV G+V+Q DGSFLDDDQ++ G+VL
Sbjct: 67 LECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVL 126
Query: 325 TCVAYPKSDVVIETHKEEELT 263
TCVAYP DV IETHKEEELT
Sbjct: 127 TCVAYPTGDVTIETHKEEELT 147
>gb|AAD02175.1| ferredoxin-like protein [Capsicum annuum]
Length = 144
Score = 196 bits (498), Expect = 2e-49
Identities = 96/141 (68%), Positives = 115/141 (81%), Gaps = 5/141 (3%)
Frame = -1
Query: 667 SGATVSTSFLRRQPVAA----FPNVGQVMFGVKGGSRGGRVT-MAAYKVKLITPEGPQEF 503
S +STSF+ R+P PNVG+ +FG+K + GG+VT MA+YKVKLITP+GP EF
Sbjct: 5 SATMISTSFMPRKPAVTSLKPIPNVGEALFGLKSAN-GGKVTCMASYKVKLITPDGPIEF 63
Query: 502 ECPDDVYILDQAEEVGIDIPYSCRAGSCSSCAGKVVEGAVDQSDGSFLDDDQVEGGFVLT 323
+CPD+VYILDQAEE G D+PYSCRAGSCSSCAGK+ GAVDQ+DG+FLDDDQ+E G+VLT
Sbjct: 64 DCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLT 123
Query: 322 CVAYPKSDVVIETHKEEELTG 260
CVAYP+SDV IETHKE EL G
Sbjct: 124 CVAYPQSDVTIETHKEAELVG 144
>sp|P09911|FER1_PEA Ferredoxin I, chloroplast precursor gi|65740|pir||FEPM1 ferredoxin
[2Fe-2S] I precursor - garden pea
gi|169087|gb|AAA33665.1| ferredoxin I precursor
Length = 149
Score = 194 bits (494), Expect = 7e-49
Identities = 102/147 (69%), Positives = 112/147 (75%), Gaps = 9/147 (6%)
Frame = -1
Query: 676 PAFSGATVSTSFLRRQPVA-------AFPNVGQVMFGVKGGSRGG--RVTMAAYKVKLIT 524
PA G VSTSFLR QP+ AF N G+K + G V MA+YKVKL+T
Sbjct: 5 PALYGTAVSTSFLRTQPMPMSVTTTKAFSNG---FLGLKTSLKRGDLAVAMASYKVKLVT 61
Query: 523 PEGPQEFECPDDVYILDQAEEVGIDIPYSCRAGSCSSCAGKVVEGAVDQSDGSFLDDDQV 344
P+G QEFECP DVYILD AEEVGID+PYSCRAGSCSSCAGKVV G VDQSDGSFLDD+Q+
Sbjct: 62 PDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQI 121
Query: 343 EGGFVLTCVAYPKSDVVIETHKEEELT 263
E GFVLTCVAYP SDVVIETHKEE+LT
Sbjct: 122 EAGFVLTCVAYPTSDVVIETHKEEDLT 148
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 644,943,147
Number of Sequences: 1393205
Number of extensions: 15122017
Number of successful extensions: 60657
Number of sequences better than 10.0: 544
Number of HSP's better than 10.0 without gapping: 55464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60230
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
