Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004719A_C01 KMC004719A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190647.1| putative protein; protein id: At3g50780.1 [Arab... 41 0.009
dbj|BAC10056.1| putative PRLI-interacting factor G [Oryza sativa... 34 1.1
gb|ZP_00002625.1| hypothetical protein [Nitrosomonas europaea] 33 1.8
ref|NP_491846.1| Putative cytoplasmic protein, with a coiled coi... 31 7.0
ref|XP_234115.1| similar to hypothetical protein MGC18754 [Mus m... 31 9.1
>ref|NP_190647.1| putative protein; protein id: At3g50780.1 [Arabidopsis thaliana]
gi|7485708|pir||T08399 hypothetical protein F18B3.60 -
Arabidopsis thaliana gi|4835229|emb|CAB42907.1| putative
protein [Arabidopsis thaliana]
gi|27754671|gb|AAO22779.1| unknown protein [Arabidopsis
thaliana] gi|28827604|gb|AAO50646.1| unknown protein
[Arabidopsis thaliana]
Length = 520
Score = 40.8 bits (94), Expect = 0.009
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -2
Query: 503 RAFELWWRRTFIRPYVENQGN 441
RAFE+WWRR+FIRPY + Q N
Sbjct: 488 RAFEVWWRRSFIRPYSDRQAN 508
>dbj|BAC10056.1| putative PRLI-interacting factor G [Oryza sativa (japonica
cultivar-group)] gi|24059874|dbj|BAC21341.1| putative
PRLI-interacting factor G [Oryza sativa (japonica
cultivar-group)]
Length = 564
Score = 33.9 bits (76), Expect = 1.1
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = -2
Query: 503 RAFELWWRRTFIRPYVENQ 447
RAF++WWRR+F+R VE Q
Sbjct: 546 RAFQVWWRRSFVRSSVEGQ 564
>gb|ZP_00002625.1| hypothetical protein [Nitrosomonas europaea]
Length = 154
Score = 33.1 bits (74), Expect = 1.8
Identities = 24/78 (30%), Positives = 36/78 (45%), Gaps = 5/78 (6%)
Frame = -1
Query: 264 WGEVSVCQN*FRGKGN*FKHVIKLTEECGF-----NLQQLTSLLLKRVTPHCMSCNELSV 100
WG + ++ + KH +L E F NLQ+L LL+ C+SC+
Sbjct: 35 WGFNKLGEHEYHESIEEMKHADQLIERILFLEGLPNLQELGKLLIGENVQECVSCD---- 90
Query: 99 VSLRKTSLD*SISVIGFC 46
+ L +TS + IS I FC
Sbjct: 91 LELERTSRETLISAIAFC 108
>ref|NP_491846.1| Putative cytoplasmic protein, with a coiled coil-4 domain, nematode
specific [Caenorhabditis elegans] gi|7510693|pir||T15130
hypothetical protein ZC328.4 - Caenorhabditis elegans
gi|13775570|gb|AAK39378.1| Hypothetical protein ZC328.4
[Caenorhabditis elegans]
Length = 404
Score = 31.2 bits (69), Expect = 7.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 127 LHELQ*VECGFFEEDLTGLINFCNWF 50
L ELQ +EC E+L +++FC+WF
Sbjct: 62 LEELQNLECSEESEELQKILDFCSWF 87
>ref|XP_234115.1| similar to hypothetical protein MGC18754 [Mus musculus] [Rattus
norvegicus]
Length = 823
Score = 30.8 bits (68), Expect = 9.1
Identities = 19/71 (26%), Positives = 37/71 (51%)
Frame = -3
Query: 472 SLDHMWKIKGMPCQKCCCPRSMNKKVSSEILKFHSVVVEFHFILTSLRSCSGSACLESLL 293
+L +K+ + C+KC R MN+ ++ +K H + F +T L+ G L++L+
Sbjct: 429 ALGKCYKVMDLICEKCMKQRDMNEVLA---MKMHYISCIFQKCITFLK--EGENKLDALI 483
Query: 292 PLILKSKSIMG 260
+LK ++ G
Sbjct: 484 KSLLKGRASDG 494
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 404,697,773
Number of Sequences: 1393205
Number of extensions: 7679765
Number of successful extensions: 25435
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 25011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25435
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
