Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004708A_C01 KMC004708A_c01
(1324 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF91469.1| putative vacuolar proton ATPase subunit E [Lycope... 378 e-103
gb|AAO69667.1| vacuolar ATPase subunit E [Phaseolus acutifolius] 368 e-100
sp|Q9SWE7|VATE_CITLI Vacuolar ATP synthase subunit E (V-ATPase E... 360 4e-98
sp|Q9MB46|VATE_CITUN Vacuolar ATP synthase subunit E (V-ATPase E... 357 2e-97
sp|O23948|VATE_GOSHI Vacuolar ATP synthase subunit E (V-ATPase E... 356 5e-97
>gb|AAF91469.1| putative vacuolar proton ATPase subunit E [Lycopersicon esculentum]
Length = 237
Score = 378 bits (970), Expect = e-103
Identities = 196/237 (82%), Positives = 216/237 (90%), Gaps = 2/237 (0%)
Frame = -1
Query: 1225 DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKERQIEI 1046
DVSKQIQQMVRFI QEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKE+Q+++
Sbjct: 1 DVSKQIQQMVRFILQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQVDV 60
Query: 1045 RRKIEYSMQLNASRIKVLQAQDDLVNTMKEAASKELLNVSHHRN-ILDALSHHHH-VYKH 872
R+KIEYSMQLNASRIKVLQAQDDLVNTMKEAA+KELLNVSHH + I+D++ HHHH YK
Sbjct: 61 RKKIEYSMQLNASRIKVLQAQDDLVNTMKEAAAKELLNVSHHEHGIIDSILHHHHGGYKK 120
Query: 871 LLKDLIIQSLLRLKEPSVLLRCREHDLHLVEHVLDSAAEEYAEKANVPQPEIIVDKHVYL 692
LL DLI+QSLLRLKEP VLLRCR+HD+HLVEHVL+ EEYAEKA+V QPEIIVD+ ++L
Sbjct: 121 LLHDLIVQSLLRLKEPCVLLRCRKHDVHLVEHVLEGVKEEYAEKASVHQPEIIVDE-IHL 179
Query: 691 PPAPSHHNTHDPYCSGGVVLASRDGKIVIENTLDARLDVLFRKKLPAIRKQLFGPVA 521
PPAPSHHN H P CSGGVVLASRDGKIV ENTLDARL+V+FRKKLP IRK LFG VA
Sbjct: 180 PPAPSHHNMHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRKCLFGQVA 236
>gb|AAO69667.1| vacuolar ATPase subunit E [Phaseolus acutifolius]
Length = 224
Score = 368 bits (945), Expect = e-100
Identities = 190/232 (81%), Positives = 205/232 (87%)
Frame = -1
Query: 1219 SKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKERQIEIRR 1040
S+QIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKERQ+EIR+
Sbjct: 1 SRQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKERQVEIRK 60
Query: 1039 KIEYSMQLNASRIKVLQAQDDLVNTMKEAASKELLNVSHHRNILDALSHHHHVYKHLLKD 860
KIEYSMQLNASRIKVLQAQDD++++MKEAASKELL +HH HVYK+LLKD
Sbjct: 61 KIEYSMQLNASRIKVLQAQDDVISSMKEAASKELLTSNHH----------DHVYKNLLKD 110
Query: 859 LIIQSLLRLKEPSVLLRCREHDLHLVEHVLDSAAEEYAEKANVPQPEIIVDKHVYLPPAP 680
LI+Q LLRLKEPSVLLRCR+ DLH VEHVLDSAA+EYA+KAN+ PEIIVD VYLPP P
Sbjct: 111 LIVQCLLRLKEPSVLLRCRKEDLHFVEHVLDSAAQEYADKANIDPPEIIVDNQVYLPPGP 170
Query: 679 SHHNTHDPYCSGGVVLASRDGKIVIENTLDARLDVLFRKKLPAIRKQLFGPV 524
SHHN HD CSGGVVLASRDGKIV ENTLDARLDV+FRKKLP IRKQLFG V
Sbjct: 171 SHHNAHDISCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQV 222
>sp|Q9SWE7|VATE_CITLI Vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolar proton
pump E subunit) (CLVE-1) gi|5733660|gb|AAD49706.1|
vacuolar V-H+ATPase subunit E [Citrus limon]
Length = 230
Score = 360 bits (923), Expect = 4e-98
Identities = 189/239 (79%), Positives = 203/239 (84%)
Frame = -1
Query: 1237 MNDGDVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKER 1058
MND DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKE+
Sbjct: 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 1057 QIEIRRKIEYSMQLNASRIKVLQAQDDLVNTMKEAASKELLNVSHHRNILDALSHHHHVY 878
Q+EIR+KIEYSMQLNASRIKVLQAQDDLV+ M EAASKE+LNVS H+ Y
Sbjct: 61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRD----------HNSY 110
Query: 877 KHLLKDLIIQSLLRLKEPSVLLRCREHDLHLVEHVLDSAAEEYAEKANVPQPEIIVDKHV 698
K LLKDLI+QSLLRLKEP+VLLRCR+ D HLVE VL+SA EEYA+K V PEIIVD H+
Sbjct: 111 KKLLKDLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHI 170
Query: 697 YLPPAPSHHNTHDPYCSGGVVLASRDGKIVIENTLDARLDVLFRKKLPAIRKQLFGPVA 521
YLPP P HHN H P CSGGVV+ASRDGKIV ENTLDARLDV+FRKKLP IRKQL VA
Sbjct: 171 YLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVA 229
>sp|Q9MB46|VATE_CITUN Vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolar proton
pump E subunit) gi|6729085|dbj|BAA89661.1| vacuolar
H+-ATPase E subunit-1 [Citrus unshiu]
Length = 230
Score = 357 bits (916), Expect = 2e-97
Identities = 188/239 (78%), Positives = 202/239 (83%)
Frame = -1
Query: 1237 MNDGDVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKER 1058
MND DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKE+
Sbjct: 1 MNDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 1057 QIEIRRKIEYSMQLNASRIKVLQAQDDLVNTMKEAASKELLNVSHHRNILDALSHHHHVY 878
Q+EIR+KIEYSMQLNASRIKVLQAQDDLV+ M EAASKE+LNVS H+ Y
Sbjct: 61 QVEIRKKIEYSMQLNASRIKVLQAQDDLVSNMMEAASKEVLNVSRD----------HNSY 110
Query: 877 KHLLKDLIIQSLLRLKEPSVLLRCREHDLHLVEHVLDSAAEEYAEKANVPQPEIIVDKHV 698
K LLK LI+QSLLRLKEP+VLLRCR+ D HLVE VL+SA EEYA+K V PEIIVD H+
Sbjct: 111 KKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHI 170
Query: 697 YLPPAPSHHNTHDPYCSGGVVLASRDGKIVIENTLDARLDVLFRKKLPAIRKQLFGPVA 521
YLPP P HHN H P CSGGVV+ASRDGKIV ENTLDARLDV+FRKKLP IRKQL VA
Sbjct: 171 YLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVA 229
>sp|O23948|VATE_GOSHI Vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolar proton
pump E subunit) gi|7447324|pir||T09848 H+-exporting
ATPase (EC 3.6.3.6) chain E, vacuolar - upland cotton
gi|2267583|gb|AAB72177.1| vacuolar H+-ATPase subunit E
[Gossypium hirsutum]
Length = 237
Score = 356 bits (913), Expect = 5e-97
Identities = 190/247 (76%), Positives = 205/247 (82%), Gaps = 8/247 (3%)
Frame = -1
Query: 1237 MNDGDVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKER 1058
M+D DVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYE+KE+
Sbjct: 1 MSDADVSKQIQQMVRFIRQEAEEKANEISVSAEEEFNIEKLQLVEAEKKKIRQEYEKKEK 60
Query: 1057 QIEIRRKIEYSMQLNASRIKVLQAQDDLVNTMKEAASKELLNVSHHRNILDALSHHHHVY 878
Q+EIR+KIEYSMQLNASRIKVLQAQDD+VN MKE+ASK+ LNV SH HHVY
Sbjct: 61 QVEIRKKIEYSMQLNASRIKVLQAQDDVVNAMKESASKDFLNV----------SHDHHVY 110
Query: 877 KHLLKDLIIQSLLRLKEPSVLLRCREHDLHLVEHVLDSAAEEYAEKANVPQPEIIVDKHV 698
K LLKDLI+QSL+RLKEP VLLRCR+ DLHLVE VLDSA EEYA K NV PEIIVD V
Sbjct: 111 KRLLKDLIVQSLVRLKEPGVLLRCRKEDLHLVESVLDSAKEEYASKVNVHPPEIIVD-DV 169
Query: 697 YLPPAPSHHN--------THDPYCSGGVVLASRDGKIVIENTLDARLDVLFRKKLPAIRK 542
+LPP PSHH+ H P+CSGGVV+ASRDGKIV ENTLDARLDV F KKLP IRK
Sbjct: 170 HLPPGPSHHHGFFHHHAEAHGPFCSGGVVIASRDGKIVFENTLDARLDVAFNKKLPEIRK 229
Query: 541 QLFGPVA 521
LFG VA
Sbjct: 230 WLFGQVA 236
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,131,243,620
Number of Sequences: 1393205
Number of extensions: 25658776
Number of successful extensions: 91105
Number of sequences better than 10.0: 373
Number of HSP's better than 10.0 without gapping: 78803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89447
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 85767660938
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
