Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004704A_C01 KMC004704A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_471529.1| similar to argininosuccinate lyase [Listeria in... 33 2.3
ref|NP_465615.1| similar to argininosuccinate lyase [Listeria mo... 33 3.0
ref|NP_691562.1| transcriptional activator of extracellular enzy... 33 3.0
ref|NP_704983.1| hypothetical protein [Plasmodium falciparum 3D7... 32 6.8
ref|NP_503583.1| Predicted CDS, putative membrane protein family... 31 8.9
>ref|NP_471529.1| similar to argininosuccinate lyase [Listeria innocua]
gi|21263403|sp|Q929S8|ARLY_LISIN Argininosuccinate lyase
(Arginosuccinase) (ASAL) gi|25292218|pir||AI1706
argininosuccinate lyase homolog argH [imported] -
Listeria innocua (strain Clip11262)
gi|16414709|emb|CAC97425.1| similar to argininosuccinate
lyase [Listeria innocua]
Length = 456
Score = 33.1 bits (74), Expect = 2.3
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -2
Query: 348 YREHIDILGKLTLLCYMLSVYLLQI*FMYYAQVNPI 241
+RE +I+GKL L C +YL + F +Y +++P+
Sbjct: 381 FREAHEIVGKLVLECTQNGIYLQDVAFSHYQEIHPL 416
>ref|NP_465615.1| similar to argininosuccinate lyase [Listeria monocytogenes EGD-e]
gi|21263391|sp|Q8Y5H1|ARLY_LISMO Argininosuccinate lyase
(Arginosuccinase) (ASAL) gi|25292217|pir||AC1336
argininosuccinate lyase homolog argH [imported] -
Listeria monocytogenes (strain EGD-e)
gi|16411561|emb|CAD00169.1| similar to argininosuccinate
lyase [Listeria monocytogenes]
Length = 456
Score = 32.7 bits (73), Expect = 3.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 348 YREHIDILGKLTLLCYMLSVYLLQI*FMYYAQVNPI 241
+RE +I+GKL L C +YL + +Y ++NP+
Sbjct: 381 FREAHEIVGKLVLECTQNGIYLQDVALSHYQEINPL 416
>ref|NP_691562.1| transcriptional activator of extracellular enzyme [Oceanobacillus
iheyensis HTE831] gi|22776321|dbj|BAC12597.1|
transcriptional activator of extracellular enzyme
[Oceanobacillus iheyensis]
Length = 225
Score = 32.7 bits (73), Expect = 3.0
Identities = 22/64 (34%), Positives = 29/64 (44%)
Frame = +2
Query: 62 FVRTSTLGSIANVTFITENMRRQSSLTLIHY*KIHYASATHSDDLRADKRPKTKTKKQQK 241
FV+ G + TF +N Q L HY K+H +A HSDD + K KK +
Sbjct: 23 FVQKVVSGDLPLETF--KNYILQDIYYLKHYGKVHAFAAAHSDDFHIAAKLAEKAKKTAE 80
Query: 242 IGLT 253
LT
Sbjct: 81 AELT 84
>ref|NP_704983.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615228|emb|CAD52218.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 6088
Score = 31.6 bits (70), Expect = 6.8
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +1
Query: 19 NIIPINPSNNSSTKICTNVNSRIDRERDF---YYRKYEKTIFSDFNPLLKDSLCFRYAL* 189
N I N +NN++ + N+N +++ERDF YR+ E I + N + ++
Sbjct: 5422 NNINSNMNNNNNNNVDVNLNYNLEKERDFTQNVYREKEVIIIDEQNDNMVEAPY------ 5475
Query: 190 *PEGGQTPKNQNKKTTEDRVNLCI 261
+ + ++ +KK E+ N+ I
Sbjct: 5476 -NDISKNEEDSDKKNIEENTNIVI 5498
>ref|NP_503583.1| Predicted CDS, putative membrane protein family member, with at
least 5 transmembrane domains, nematode specific
[Caenorhabditis elegans] gi|7497482|pir||T32719
hypothetical protein C45H4.9 - Caenorhabditis elegans
gi|2736532|gb|AAC25875.1| Hypothetical protein C45H4.9
[Caenorhabditis elegans]
Length = 297
Score = 31.2 bits (69), Expect = 8.9
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Frame = -2
Query: 519 YQATVTVFVQ*L-----SHISMCNYY*LLSGSRRLSHMCSI*VAPTVVVPLSPIEVLLID 355
Y TVT+F+ + +++ N++ LLSG + ++ ++ V + +PI
Sbjct: 57 YGITVTIFLSLMIAANFNNLETINHFTLLSGLL----VWNVGISQAVAI-FTPI------ 105
Query: 354 PFYREHIDILGKLTLLCYMLSVYLLQI*FMYYAQVNPIFCCFFVLVFGR 208
FYR H ++ +LC + + Q F+YY C F L F R
Sbjct: 106 -FYRNHRSLVTNSVILCLIFGYAIFQYSFIYY-------FCNFELTFPR 146
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,991,715
Number of Sequences: 1393205
Number of extensions: 9582122
Number of successful extensions: 21918
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21901
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
