Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004694A_C01 KMC004694A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565982.1| expressed protein; protein id: At2g42750.1, sup... 117 5e-44
pir||G84857 hypothetical protein At2g42750 [imported] - Arabidop... 110 2e-39
dbj|BAB63525.1| P0435H01.21 [Oryza sativa (japonica cultivar-gro... 97 3e-28
ref|NP_477118.1| crooked neck CG3193-PA gi|17380353|sp|P17886|CR... 35 0.70
emb|CAA41263.1| crn [Drosophila melanogaster] 35 0.70
>ref|NP_565982.1| expressed protein; protein id: At2g42750.1, supported by cDNA:
15743., supported by cDNA: gi_17978967, supported by
cDNA: gi_20453336 [Arabidopsis thaliana]
gi|17978968|gb|AAL47445.1| At2g42750/F7D19.25
[Arabidopsis thaliana] gi|20197961|gb|AAD21732.2|
expressed protein [Arabidopsis thaliana]
gi|20453337|gb|AAM19907.1| At2g42750/F7D19.25
[Arabidopsis thaliana] gi|21553687|gb|AAM62780.1|
unknown [Arabidopsis thaliana]
Length = 344
Score = 117 bits (294), Expect(2) = 5e-44
Identities = 53/70 (75%), Positives = 63/70 (89%)
Frame = -1
Query: 440 RMMKQKGSDETDSYWDNLWGKPRDYQRSEDEVKERAKRAAAAARRWREYSRKGVDKPPTF 261
RMMK+K +DET SYWDNLWGK +YQ+SE+EV+ERA+RAAAAARRWREYSR+GVDK PTF
Sbjct: 274 RMMKRKNTDETPSYWDNLWGKQNEYQKSEEEVQERAQRAAAAARRWREYSRRGVDKRPTF 333
Query: 260 KLPEAASSKD 231
KLP++AS D
Sbjct: 334 KLPDSASRGD 343
Score = 82.0 bits (201), Expect(2) = 5e-44
Identities = 41/47 (87%), Positives = 44/47 (93%)
Frame = -3
Query: 585 LEDEMRRVERVNVALMLSGMGSASSDVFRMASSRWEKRQAQVLDQAR 445
LEDEMRRVERVNVALMLSGMGS + DVFRMA SRWEKRQA+VL+QAR
Sbjct: 226 LEDEMRRVERVNVALMLSGMGSGAVDVFRMARSRWEKRQAKVLNQAR 272
>pir||G84857 hypothetical protein At2g42750 [imported] - Arabidopsis thaliana
Length = 377
Score = 110 bits (274), Expect(2) = 2e-39
Identities = 52/75 (69%), Positives = 63/75 (83%), Gaps = 5/75 (6%)
Frame = -1
Query: 440 RMMKQKGSDETDSYWDNLWGKPRDYQRS-----EDEVKERAKRAAAAARRWREYSRKGVD 276
RMMK+K +DET SYWDNLWGK +YQ+S ++EV+ERA+RAAAAARRWREYSR+GVD
Sbjct: 302 RMMKRKNTDETPSYWDNLWGKQNEYQKSGKIDDKEEVQERAQRAAAAARRWREYSRRGVD 361
Query: 275 KPPTFKLPEAASSKD 231
K PTFKLP++AS D
Sbjct: 362 KRPTFKLPDSASRGD 376
Score = 74.3 bits (181), Expect(2) = 2e-39
Identities = 41/56 (73%), Positives = 44/56 (78%), Gaps = 9/56 (16%)
Frame = -3
Query: 585 LEDEMRRVERVN---------VALMLSGMGSASSDVFRMASSRWEKRQAQVLDQAR 445
LEDEMRRVERVN VALMLSGMGS + DVFRMA SRWEKRQA+VL+QAR
Sbjct: 245 LEDEMRRVERVNLLELSLIDQVALMLSGMGSGAVDVFRMARSRWEKRQAKVLNQAR 300
>dbj|BAB63525.1| P0435H01.21 [Oryza sativa (japonica cultivar-group)]
Length = 348
Score = 97.4 bits (241), Expect(2) = 3e-28
Identities = 45/70 (64%), Positives = 56/70 (79%)
Frame = -1
Query: 440 RMMKQKGSDETDSYWDNLWGKPRDYQRSEDEVKERAKRAAAAARRWREYSRKGVDKPPTF 261
R + Q+ S + S W ++WG P Y+++EDE +ERAKRAAAAARRWREYSRKG DKPPTF
Sbjct: 280 RRVSQEDSGKGSS-WSDVWGAPTRYRKNEDEARERAKRAAAAARRWREYSRKGADKPPTF 338
Query: 260 KLPEAASSKD 231
KLPEA S+K+
Sbjct: 339 KLPEAVSNKE 348
Score = 49.3 bits (116), Expect(2) = 3e-28
Identities = 27/34 (79%), Positives = 28/34 (81%)
Frame = -3
Query: 585 LEDEMRRVERVNVALMLSGMGSASSDVFRMASSR 484
LEDEMRRVERVNV LML+GMGS S DVFRM R
Sbjct: 247 LEDEMRRVERVNVGLMLAGMGS-SVDVFRMEKVR 279
>ref|NP_477118.1| crooked neck CG3193-PA gi|17380353|sp|P17886|CRN_DROME Crooked neck
protein gi|7511997|pir||T13427 probable cell cycle
control protein crn - fruit fly (Drosophila
melanogaster) gi|2827496|emb|CAA15705.1| EG:30B8.1
[Drosophila melanogaster] gi|7290299|gb|AAF45760.1|
CG3193-PA [Drosophila melanogaster]
gi|15291643|gb|AAK93090.1| LD21701p [Drosophila
melanogaster]
Length = 702
Score = 35.0 bits (79), Expect = 0.70
Identities = 31/107 (28%), Positives = 49/107 (44%), Gaps = 9/107 (8%)
Frame = -1
Query: 533 LGWDQHRVMFSE-WQVPDGKRDRPKSW-----IKHDPRMMKQKGSDETDSYWDNLWGKPR 372
LG + RV+ E W+ D +RD S + PR +K++ +D+ + W +
Sbjct: 586 LGDKESRVLLLEAWR--DFERDASDSQEMQKVMDKMPRRIKKRQKIVSDNGVEEGWEEVF 643
Query: 371 DYQRSEDEVKERAKRAAAAARRWREYSRKGVDKPPTFKL---PEAAS 240
DY EDE+ + AAA+ W+ VD PP + PE A+
Sbjct: 644 DYIFPEDEMARPNLKLLAAAKMWKTQKDNTVDDPPATAIASEPEPAA 690
>emb|CAA41263.1| crn [Drosophila melanogaster]
Length = 702
Score = 35.0 bits (79), Expect = 0.70
Identities = 31/107 (28%), Positives = 49/107 (44%), Gaps = 9/107 (8%)
Frame = -1
Query: 533 LGWDQHRVMFSE-WQVPDGKRDRPKSW-----IKHDPRMMKQKGSDETDSYWDNLWGKPR 372
LG + RV+ E W+ D +RD S + PR +K++ +D+ + W +
Sbjct: 586 LGDKESRVLLLEAWR--DFERDASDSQEMQKVMDKMPRRIKKRQKIVSDNGVEEGWEEVF 643
Query: 371 DYQRSEDEVKERAKRAAAAARRWREYSRKGVDKPPTFKL---PEAAS 240
DY EDE+ + AAA+ W+ VD PP + PE A+
Sbjct: 644 DYIFPEDEMARPNLKLLAAAKMWKTQKDNTVDDPPATAIASEPEPAA 690
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,642,277
Number of Sequences: 1393205
Number of extensions: 11179954
Number of successful extensions: 28232
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 27343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28188
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
