Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004683A_C01 KMC004683A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T47843 dynamin-like protein 4 (ADL4) - Arabidopsis thaliana... 66 4e-10
ref|NP_567094.1| dynamin-like protein 4 (ADL4); protein id: At3g... 66 4e-10
gb|AAF22292.1|AF180733_1 dynamin-like protein 4 [Arabidopsis tha... 66 4e-10
gb|AAL79688.1|AC087599_7 putative phragmoplastin [Oryza sativa] 64 1e-09
pir||S63667 phragmoplastin 12 - soybean gi|1217994|gb|AAB05992.1... 63 3e-09
>pir||T47843 dynamin-like protein 4 (ADL4) - Arabidopsis thaliana
gi|7076772|emb|CAB75934.1| dynamin-like protein 4 (ADL4)
[Arabidopsis thaliana]
gi|19423872|gb|AAL88715.1|AF488725_1 dynamin-like
protein E [Arabidopsis thaliana]
Length = 621
Score = 65.9 bits (159), Expect = 4e-10
Identities = 43/77 (55%), Positives = 52/77 (66%), Gaps = 2/77 (2%)
Frame = -2
Query: 579 EFFATIPDYAHLASMMGSEHLAWLLSKYLEDWIIVNRIPAIPSFIDRSIRELRAEW--LC 406
E+F T PDY HLAS MGSE+LA LLSK+LE +I RIP+I S I++SI EL E +
Sbjct: 266 EYFDTSPDYGHLASKMGSEYLAKLLSKHLES-VIRTRIPSILSLINKSIEELERELDRMG 324
Query: 405 TTVPSDAGARQLAQLLE 355
V DAGA QL +LE
Sbjct: 325 RPVAVDAGA-QLYTILE 340
Score = 44.7 bits (104), Expect = 9e-04
Identities = 22/35 (62%), Positives = 26/35 (73%)
Frame = -2
Query: 348 QLLEEDSVLTARRQGCAERLELYQFARYEIEAVLW 244
QLL+ED L RR CA+RLELY+ AR EI+AV W
Sbjct: 585 QLLDEDPALMDRRLECAKRLELYKKARDEIDAVAW 619
>ref|NP_567094.1| dynamin-like protein 4 (ADL4); protein id: At3g60190.1, supported
by cDNA: gi_16226787, supported by cDNA: gi_19423871,
supported by cDNA: gi_6651400 [Arabidopsis thaliana]
gi|11991508|emb|CAC19657.1| dynamin-like protein DLP2
[Arabidopsis thaliana]
gi|16226788|gb|AAL16262.1|AF428332_1 AT3g60190/T2O9_170
[Arabidopsis thaliana]
Length = 624
Score = 65.9 bits (159), Expect = 4e-10
Identities = 43/77 (55%), Positives = 52/77 (66%), Gaps = 2/77 (2%)
Frame = -2
Query: 579 EFFATIPDYAHLASMMGSEHLAWLLSKYLEDWIIVNRIPAIPSFIDRSIRELRAEW--LC 406
E+F T PDY HLAS MGSE+LA LLSK+LE +I RIP+I S I++SI EL E +
Sbjct: 269 EYFDTSPDYGHLASKMGSEYLAKLLSKHLES-VIRTRIPSILSLINKSIEELERELDRMG 327
Query: 405 TTVPSDAGARQLAQLLE 355
V DAGA QL +LE
Sbjct: 328 RPVAVDAGA-QLYTILE 343
Score = 44.7 bits (104), Expect = 9e-04
Identities = 22/35 (62%), Positives = 26/35 (73%)
Frame = -2
Query: 348 QLLEEDSVLTARRQGCAERLELYQFARYEIEAVLW 244
QLL+ED L RR CA+RLELY+ AR EI+AV W
Sbjct: 588 QLLDEDPALMDRRLECAKRLELYKKARDEIDAVAW 622
>gb|AAF22292.1|AF180733_1 dynamin-like protein 4 [Arabidopsis thaliana]
Length = 626
Score = 65.9 bits (159), Expect = 4e-10
Identities = 43/77 (55%), Positives = 52/77 (66%), Gaps = 2/77 (2%)
Frame = -2
Query: 579 EFFATIPDYAHLASMMGSEHLAWLLSKYLEDWIIVNRIPAIPSFIDRSIRELRAEW--LC 406
E+F T PDY HLAS MGSE+LA LLSK+LE +I RIP+I S I++SI EL E +
Sbjct: 270 EYFDTSPDYGHLASKMGSEYLAKLLSKHLES-VIRTRIPSILSLINKSIEELERELDRMG 328
Query: 405 TTVPSDAGARQLAQLLE 355
V DAGA QL +LE
Sbjct: 329 RPVAVDAGA-QLYTILE 344
Score = 44.7 bits (104), Expect = 9e-04
Identities = 22/35 (62%), Positives = 26/35 (73%)
Frame = -2
Query: 348 QLLEEDSVLTARRQGCAERLELYQFARYEIEAVLW 244
QLL+ED L RR CA+RLELY+ AR EI+AV W
Sbjct: 590 QLLDEDPALMDRRLECAKRLELYKKARDEIDAVAW 624
>gb|AAL79688.1|AC087599_7 putative phragmoplastin [Oryza sativa]
Length = 618
Score = 64.3 bits (155), Expect = 1e-09
Identities = 41/84 (48%), Positives = 59/84 (69%), Gaps = 2/84 (2%)
Frame = -2
Query: 579 EFFATIPDYAHLASMMGSEHLAWLLSKYLEDWIIVNRIPAIPSFIDRSIRELRAEW--LC 406
EFFA+ P+Y+HL+S MGSE+LA LLS++LE +I RIP+I S I+++I EL +E +
Sbjct: 269 EFFASSPEYSHLSSRMGSEYLAKLLSQHLEA-VIRARIPSITSLINKTIDELESEMDHIG 327
Query: 405 TTVPSDAGARQLAQLLEDAQLLEE 334
+ SDAGA QL +LE + E+
Sbjct: 328 RPIASDAGA-QLYLVLELCRAFEK 350
Score = 48.9 bits (115), Expect = 5e-05
Identities = 27/51 (52%), Positives = 33/51 (63%)
Frame = -2
Query: 393 SDAGARQLAQLLEDAQLLEEDSVLTARRQGCAERLELYQFARYEIEAVLWS 241
+ G + QL AQLL+ED L RRQ C +RLELY+ AR EI+AV WS
Sbjct: 570 TQVGRKDAKQL---AQLLDEDPALMERRQQCFKRLELYKSARDEIDAVSWS 617
>pir||S63667 phragmoplastin 12 - soybean gi|1217994|gb|AAB05992.1| SDL
Length = 610
Score = 62.8 bits (151), Expect = 3e-09
Identities = 36/73 (49%), Positives = 50/73 (68%), Gaps = 2/73 (2%)
Frame = -2
Query: 579 EFFATIPDYAHLASMMGSEHLAWLLSKYLEDWIIVNRIPAIPSFIDRSIRELRAEW--LC 406
E+F + P+Y HLA+ MGSEHLA +LSK+LE +I ++IP I S I+++I EL AE L
Sbjct: 263 EYFNSTPEYKHLANRMGSEHLAKMLSKHLET-VIKSKIPGIQSLINKTIAELEAELTRLG 321
Query: 405 TTVPSDAGARQLA 367
V +DAG + A
Sbjct: 322 KPVAADAGGKLYA 334
Score = 40.4 bits (93), Expect = 0.016
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = -2
Query: 351 AQLLEEDSVLTARRQGCAERLELYQFARYEIEAVLWS 241
+ LL ED + RR A+RLELY+ A+ EI+AV WS
Sbjct: 573 SSLLNEDPAIMERRSALAKRLELYRSAQAEIDAVAWS 609
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,552,461
Number of Sequences: 1393205
Number of extensions: 10710208
Number of successful extensions: 40533
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 34832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38652
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
