Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004681A_C01 KMC004681A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D86219 protein F22O13.19 [imported] - Arabidopsis thaliana ... 37 0.12
gb|AAL38751.1| unknown protein [Arabidopsis thaliana] gi|2213674... 37 0.12
ref|NP_172347.1| F-box protein family; protein id: At1g08710.1 [... 37 0.12
ref|NP_569033.1| putative protein; protein id: At5g66410.1, supp... 32 5.2
dbj|BAB10917.1| contains similarity to ATP binding protein assoc... 32 5.2
>pir||D86219 protein F22O13.19 [imported] - Arabidopsis thaliana
gi|9802559|gb|AAF99761.1|AC003981_11 F22O13.19
[Arabidopsis thaliana]
Length = 313
Score = 37.4 bits (85), Expect = 0.12
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = -2
Query: 553 LEKYHQDEKRRLNIAKEELEFMKYHPLQAHKPV-SGRENEHDVTRKKSKSCN 401
L + ++ K R +IA +ELE MKYHPL+ +K + +G + + T+K S N
Sbjct: 174 LNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 225
>gb|AAL38751.1| unknown protein [Arabidopsis thaliana] gi|22136746|gb|AAM91692.1|
unknown protein [Arabidopsis thaliana]
Length = 274
Score = 37.4 bits (85), Expect = 0.12
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = -2
Query: 553 LEKYHQDEKRRLNIAKEELEFMKYHPLQAHKPV-SGRENEHDVTRKKSKSCN 401
L + ++ K R +IA +ELE MKYHPL+ +K + +G + + T+K S N
Sbjct: 187 LNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 238
>ref|NP_172347.1| F-box protein family; protein id: At1g08710.1 [Arabidopsis
thaliana] gi|7485985|pir||T00725 hypothetical protein
F22O13.20 - Arabidopsis thaliana
Length = 295
Score = 37.4 bits (85), Expect = 0.12
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = -2
Query: 553 LEKYHQDEKRRLNIAKEELEFMKYHPLQAHKPV-SGRENEHDVTRKKSKSCN 401
L + ++ K R +IA +ELE MKYHPL+ +K + +G + + T+K S N
Sbjct: 187 LNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSIN 238
>ref|NP_569033.1| putative protein; protein id: At5g66410.1, supported by cDNA: 2489.
[Arabidopsis thaliana] gi|21592510|gb|AAM64460.1|
ATP-binding protein-like protein [Arabidopsis thaliana]
gi|28393214|gb|AAO42037.1| unknown protein [Arabidopsis
thaliana] gi|28973557|gb|AAO64103.1| unknown protein
[Arabidopsis thaliana]
Length = 230
Score = 32.0 bits (71), Expect = 5.2
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = -2
Query: 553 LEKYHQDEKRRLNIAKEELEFMKYHPLQAHKPVSGRENEHDVTRKKSKSCNSLQEKKYKT 374
LEK H D L E+ E K ++ VS + +VTR + C+ ++ Y+
Sbjct: 57 LEKLHADRIAALRREVEKREAFKRQGHGEYREVSEGDFLGEVTRSEKVICHFYHKEFYRC 116
Query: 373 S*MDMHLAT 347
MD HL T
Sbjct: 117 KIMDKHLKT 125
>dbj|BAB10917.1| contains similarity to ATP binding protein associated with cell
differentiation~gene_id:K1F13.6 [Arabidopsis thaliana]
Length = 234
Score = 32.0 bits (71), Expect = 5.2
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = -2
Query: 553 LEKYHQDEKRRLNIAKEELEFMKYHPLQAHKPVSGRENEHDVTRKKSKSCNSLQEKKYKT 374
LEK H D L E+ E K ++ VS + +VTR + C+ ++ Y+
Sbjct: 57 LEKLHADRIAALRREVEKREAFKRQGHGEYREVSEGDFLGEVTRSEKVICHFYHKEFYRC 116
Query: 373 S*MDMHLAT 347
MD HL T
Sbjct: 117 KIMDKHLKT 125
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,764,528
Number of Sequences: 1393205
Number of extensions: 8911281
Number of successful extensions: 22847
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22833
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
