Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004671A_C01 KMC004671A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF67831.1| putative chitinase [Medicago truncatula] 80 2e-14
emb|CAA54374.1| chitinase, class V [Nicotiana tabacum] 73 2e-12
pir||S51591 chitinase (EC 3.2.1.14) / lysozyme (EC 3.2.1.17) PZ ... 71 1e-11
emb|CAA54373.1| chitinase, class V [Nicotiana tabacum] 71 1e-11
ref|NP_193716.1| glycosyl hydrolase family 18; protein id: At4g1... 70 1e-11
>gb|AAF67831.1| putative chitinase [Medicago truncatula]
Length = 60
Score = 79.7 bits (195), Expect = 2e-14
Identities = 37/54 (68%), Positives = 45/54 (82%)
Frame = -1
Query: 574 RDPNLHGIGSEAVGVGPGLDGAMAYFQVLDFIEETGAKVVYDVGTVSVYSHSGS 413
+DPN+HGIG+ VG GPG+DG MAYFQV+DF ++ GAKVVYD T SVYS+SGS
Sbjct: 6 QDPNVHGIGAPNVGPGPGVDGGMAYFQVVDFNKQMGAKVVYDKETGSVYSYSGS 59
>emb|CAA54374.1| chitinase, class V [Nicotiana tabacum]
Length = 377
Score = 73.2 bits (178), Expect = 2e-12
Identities = 36/83 (43%), Positives = 49/83 (58%), Gaps = 3/83 (3%)
Frame = -1
Query: 565 NLHGIGSEAVG---VGPGLDGAMAYFQVLDFIEETGAKVVYDVGTVSVYSHSGSNWVGYD 395
N+HG+ + A G VG DG+M Y ++ D+I E+ A VY+ V Y +SGSNW+ YD
Sbjct: 269 NIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRATTVYNATIVGDYCYSGSNWISYD 328
Query: 394 DLPTVAAKVGFAQALSLRGYFFW 326
D TV KV + + L GYF W
Sbjct: 329 DTQTVRNKVNYVKGRGLLGYFAW 351
>pir||S51591 chitinase (EC 3.2.1.14) / lysozyme (EC 3.2.1.17) PZ precursor,
pathogenesis-related - common tobacco
gi|467689|emb|CAA55128.1| chitinase/lysozyme [Nicotiana
tabacum]
Length = 378
Score = 70.9 bits (172), Expect = 1e-11
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Frame = -1
Query: 571 DPNLHGIGSEAVG---VGPGLDGAMAYFQVLDFIEETGAKVVYDVGTVSVYSHSGSNWVG 401
+PN+H + + A G VG DG+M Y ++ D+I ++ A VY+ V Y +SGSNW+
Sbjct: 268 NPNIHDLRAPAAGKSNVGAVDDGSMTYNRIRDYIVQSRATTVYNATIVGDYCYSGSNWIS 327
Query: 400 YDDLPTVAAKVGFAQALSLRGYFFW 326
YDD +V KV + + L GYF W
Sbjct: 328 YDDTQSVRNKVNYVKGRGLLGYFAW 352
>emb|CAA54373.1| chitinase, class V [Nicotiana tabacum]
Length = 369
Score = 70.9 bits (172), Expect = 1e-11
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Frame = -1
Query: 571 DPNLHGIGSEAVG---VGPGLDGAMAYFQVLDFIEETGAKVVYDVGTVSVYSHSGSNWVG 401
+PN+H + + A G VG DG+M Y ++ D+I ++ A VY+ V Y +SGSNW+
Sbjct: 259 NPNIHDLRAPAAGKSNVGAVDDGSMTYNRIRDYIVQSRATTVYNATIVGDYCYSGSNWIS 318
Query: 400 YDDLPTVAAKVGFAQALSLRGYFFW 326
YDD +V KV + + L GYF W
Sbjct: 319 YDDTQSVRNKVNYVKGRGLLGYFAW 343
>ref|NP_193716.1| glycosyl hydrolase family 18; protein id: At4g19810.1 [Arabidopsis
thaliana] gi|7435380|pir||T04762 chitinase homolog
T16H5.170 - Arabidopsis thaliana
gi|3250690|emb|CAA19698.1| putative chitinase
[Arabidopsis thaliana] gi|7268777|emb|CAB78983.1|
putative chitinase [Arabidopsis thaliana]
Length = 379
Score = 70.5 bits (171), Expect = 1e-11
Identities = 32/85 (37%), Positives = 46/85 (53%)
Frame = -1
Query: 565 NLHGIGSEAVGVGPGLDGAMAYFQVLDFIEETGAKVVYDVGTVSVYSHSGSNWVGYDDLP 386
N H + G DG++ Y Q+ FI + GA VY+ V Y ++G+NW+GYDD
Sbjct: 269 NSHSYYAPTTGAAISPDGSIGYGQIRKFIVDNGATTVYNSTVVGDYCYAGTNWIGYDDNQ 328
Query: 385 TVAAKVGFAQALSLRGYFFWAAGLD 311
++ KV +A+ L GYF W G D
Sbjct: 329 SIVTKVRYAKQRGLLGYFSWHVGAD 353
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 557,415,714
Number of Sequences: 1393205
Number of extensions: 14139594
Number of successful extensions: 59670
Number of sequences better than 10.0: 844
Number of HSP's better than 10.0 without gapping: 41937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51474
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
