Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004664A_C01 KMC004664A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O24464|KAD_PRUAR ADENYLATE KINASE (ATP-AMP TRANSPHOSPHORYLASE... 38 0.075
ref|NP_194258.1| UMP/CMP kinase like protein; protein id: At4g25... 38 0.075
dbj|BAB91158.1| maturase [Alchemilla japonica] 34 1.4
gb|EAA21348.1| hypothetical protein [Plasmodium yoelii yoelii] 32 4.1
dbj|BAC53723.1| Piccolo [Mus musculus] 31 9.1
>sp|O24464|KAD_PRUAR ADENYLATE KINASE (ATP-AMP TRANSPHOSPHORYLASE)
gi|2351578|gb|AAB68604.1| adenylate kinase homolog
[Prunus armeniaca]
Length = 231
Score = 38.1 bits (87), Expect = 0.075
Identities = 16/27 (59%), Positives = 23/27 (84%)
Frame = -3
Query: 289 LSSSQGSIDDNIDTMKKCLKIFESLNF 209
L+ +QG +DDNIDT+KK L+IF+ LN+
Sbjct: 168 LNRNQGRVDDNIDTIKKRLEIFDELNW 194
>ref|NP_194258.1| UMP/CMP kinase like protein; protein id: At4g25280.1 [Arabidopsis
thaliana] gi|7484791|pir||T05549 adenylate kinase
homolog F24A6.120 - Arabidopsis thaliana
gi|4454016|emb|CAA23069.1| UMP/CMP kinase like protein
[Arabidopsis thaliana] gi|7269379|emb|CAB81339.1|
UMP/CMP kinase like protein [Arabidopsis thaliana]
Length = 227
Score = 38.1 bits (87), Expect = 0.075
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = -3
Query: 289 LSSSQGSIDDNIDTMKKCLKIFESLN 212
L+ +QG IDDNI TMKK LKIF +LN
Sbjct: 164 LNRNQGRIDDNITTMKKRLKIFNALN 189
>dbj|BAB91158.1| maturase [Alchemilla japonica]
Length = 500
Score = 33.9 bits (76), Expect = 1.4
Identities = 21/79 (26%), Positives = 42/79 (52%), Gaps = 3/79 (3%)
Frame = -1
Query: 450 QLNKQIKYNSIRPLGLYDLFRSFILMIVHDSGLQQSLCFKCI---PLLSFFLFRKDLSRV 280
+L + +Y+ + PL +FR +I + HD GL +S+ F + SF + ++ +SR+
Sbjct: 9 ELYRSPQYDFLYPL----IFREYIYALAHDRGLNRSILFDNVGSDKKYSFLIIKRLISRM 64
Query: 279 HKGQLMTI*IQ*RNV*KYL 223
++ + I + N K+L
Sbjct: 65 YQQKYFLISVNDSNQNKFL 83
>gb|EAA21348.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2974
Score = 32.3 bits (72), Expect = 4.1
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Frame = +1
Query: 61 NKLTNGHEHERKYRDPASEFEYIKIETPKYINQLQEDICKLPTLANPLAKNLKTQIFLDI 240
N + N E E+ Y+D I ++ + IN L KLP N + KN + DI
Sbjct: 1018 NGICNHAEGEKIYKD-------INVDNNRSINNL-----KLPNELNCMDKNDNIE---DI 1062
Query: 241 SSLYLYCHQLTLVNSREIL---TKEKERKQWD 327
S++YL TL REI+ T + WD
Sbjct: 1063 SNMYLNKIAYTLKKKREIIIENTYTNNKNYWD 1094
>dbj|BAC53723.1| Piccolo [Mus musculus]
Length = 5165
Score = 31.2 bits (69), Expect = 9.1
Identities = 20/104 (19%), Positives = 50/104 (47%)
Frame = +1
Query: 187 TLANPLAKNLKTQIFLDISSLYLYCHQLTLVNSREILTKEKERKQWDTLKT*TLLETRIM 366
T ++P+ ++ QI D+ +L ++ ++ +R ++ ++ +K L +
Sbjct: 4723 TASHPITGEIQLQINYDLGNLIIH-----ILQARNLVPRDNNGYSDPFVKVYLLPGRGVE 4777
Query: 367 YNHQNE*SKKVIQPQWSDTVVFDLFV*LSFGSLMMSCFMQLTCW 498
Y + + +K + P+W+ TV++ +S LM +++T W
Sbjct: 4778 YKRRTKYVQKSLNPEWNQTVIYKS---ISMEQLMKKT-LEVTVW 4817
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,486,430
Number of Sequences: 1393205
Number of extensions: 8376477
Number of successful extensions: 21928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21922
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
