Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004657A_C01 KMC004657A_c01
(711 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA95779.1| polygalacturonase-like protein [Arabidopsis thal... 113 3e-24
gb|AAM62920.1| polygalacturonase, putative [Arabidopsis thaliana] 113 3e-24
ref|NP_188308.1| polygalacturonase, putative; protein id: At3g16... 113 3e-24
gb|AAM65366.1| polygalacturonase-like protein [Arabidopsis thali... 109 3e-23
ref|NP_566292.1| polygalacturonase, putative; protein id: At3g06... 109 3e-23
>dbj|BAA95779.1| polygalacturonase-like protein [Arabidopsis thaliana]
Length = 453
Score = 113 bits (282), Expect = 3e-24
Identities = 56/123 (45%), Positives = 79/123 (63%)
Frame = -1
Query: 711 GYMKDILISDTKLENIHLGIGMIGDYGSHPDDKYDPNAMPVVGSITFKNVVGGNVSIAGN 532
GY+++I ISD L ++ I G GSHPDDK+D +A+PVV I +N G ++ +AGN
Sbjct: 321 GYIRNITISDVDLTSVDTAIVANGHTGSHPDDKFDRDALPVVTHIVMRNFTGVDIGVAGN 380
Query: 531 FSGIVDSPFAPICLSNVTFSISSESSSPSWFCSNVMGFSEEVFPKPCSDLQSSYSTNIPS 352
+GI +SPF ICL+++ SE SW CSNV GFS++V P+PC +L SS S S
Sbjct: 381 LTGIGESPFTSICLADIHLQTRSEE---SWICSNVSGFSDDVSPEPCQELMSSPS----S 433
Query: 351 CYS 343
C++
Sbjct: 434 CFA 436
>gb|AAM62920.1| polygalacturonase, putative [Arabidopsis thaliana]
Length = 453
Score = 113 bits (282), Expect = 3e-24
Identities = 56/123 (45%), Positives = 79/123 (63%)
Frame = -1
Query: 711 GYMKDILISDTKLENIHLGIGMIGDYGSHPDDKYDPNAMPVVGSITFKNVVGGNVSIAGN 532
GY+++I ISD L ++ I G GSHPDDK+D +A+PVV I +N G ++ +AGN
Sbjct: 321 GYIRNITISDVDLTSVDTAIVTNGHTGSHPDDKFDRDALPVVTHIVMRNFTGVDIGVAGN 380
Query: 531 FSGIVDSPFAPICLSNVTFSISSESSSPSWFCSNVMGFSEEVFPKPCSDLQSSYSTNIPS 352
+GI +SPF ICL+++ SE SW CSNV GFS++V P+PC +L SS S S
Sbjct: 381 LTGIGESPFTSICLADIHLQTRSEE---SWICSNVSGFSDDVSPEPCQELMSSPS----S 433
Query: 351 CYS 343
C++
Sbjct: 434 CFA 436
>ref|NP_188308.1| polygalacturonase, putative; protein id: At3g16850.1, supported by
cDNA: 17203., supported by cDNA: gi_14334801, supported
by cDNA: gi_21280834 [Arabidopsis thaliana]
gi|14334802|gb|AAK59579.1| putative polygalacturonase
[Arabidopsis thaliana] gi|21280835|gb|AAM44924.1|
putative polygalacturonase [Arabidopsis thaliana]
Length = 455
Score = 113 bits (282), Expect = 3e-24
Identities = 56/123 (45%), Positives = 79/123 (63%)
Frame = -1
Query: 711 GYMKDILISDTKLENIHLGIGMIGDYGSHPDDKYDPNAMPVVGSITFKNVVGGNVSIAGN 532
GY+++I ISD L ++ I G GSHPDDK+D +A+PVV I +N G ++ +AGN
Sbjct: 323 GYIRNITISDVDLTSVDTAIVANGHTGSHPDDKFDRDALPVVTHIVMRNFTGVDIGVAGN 382
Query: 531 FSGIVDSPFAPICLSNVTFSISSESSSPSWFCSNVMGFSEEVFPKPCSDLQSSYSTNIPS 352
+GI +SPF ICL+++ SE SW CSNV GFS++V P+PC +L SS S S
Sbjct: 383 LTGIGESPFTSICLADIHLQTRSEE---SWICSNVSGFSDDVSPEPCQELMSSPS----S 435
Query: 351 CYS 343
C++
Sbjct: 436 CFA 438
>gb|AAM65366.1| polygalacturonase-like protein [Arabidopsis thaliana]
Length = 377
Score = 109 bits (273), Expect = 3e-23
Identities = 56/111 (50%), Positives = 73/111 (65%)
Frame = -1
Query: 711 GYMKDILISDTKLENIHLGIGMIGDYGSHPDDKYDPNAMPVVGSITFKNVVGGNVSIAGN 532
GY+K+I IS+ + I I G +GSHPDDKYD NA+P+V I N+ G N+ IAG
Sbjct: 257 GYIKEIDISNIDMLRIGTAIVANGSFGSHPDDKYDVNALPLVSHIRLSNISGENIGIAGK 316
Query: 531 FSGIVDSPFAPICLSNVTFSISSESSSPSWFCSNVMGFSEEVFPKPCSDLQ 379
GI +SPF+ + LSNV+ S+SS SS SW CS V G SE V P+PC +L+
Sbjct: 317 LFGIKESPFSSVTLSNVSLSMSS-GSSVSWQCSYVYGSSESVIPEPCPELK 366
>ref|NP_566292.1| polygalacturonase, putative; protein id: At3g06770.1, supported by
cDNA: 38575. [Arabidopsis thaliana]
gi|7549636|gb|AAF63821.1| unknown protein [Arabidopsis
thaliana]
Length = 377
Score = 109 bits (273), Expect = 3e-23
Identities = 56/111 (50%), Positives = 73/111 (65%)
Frame = -1
Query: 711 GYMKDILISDTKLENIHLGIGMIGDYGSHPDDKYDPNAMPVVGSITFKNVVGGNVSIAGN 532
GY+K+I IS+ + I I G +GSHPDDKYD NA+P+V I N+ G N+ IAG
Sbjct: 257 GYIKEIDISNIDMLRIGTAIVANGSFGSHPDDKYDVNALPLVSHIRLSNISGENIGIAGK 316
Query: 531 FSGIVDSPFAPICLSNVTFSISSESSSPSWFCSNVMGFSEEVFPKPCSDLQ 379
GI +SPF+ + LSNV+ S+SS SS SW CS V G SE V P+PC +L+
Sbjct: 317 LFGIKESPFSSVTLSNVSLSMSS-GSSVSWQCSYVYGSSESVIPEPCPELK 366
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,762,985
Number of Sequences: 1393205
Number of extensions: 12496059
Number of successful extensions: 37552
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 36315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37515
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
