Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004656A_C01 KMC004656A_c01
(923 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB03357.1| unnamed protein product [Oryza sativa (japonica ... 92 8e-18
ref|NP_196928.1| putative protein; protein id: At5g14240.1, supp... 86 8e-16
gb|AAM65214.1| unknown [Arabidopsis thaliana] 85 1e-15
gb|AAM78582.1| RanGAP1 interacting protein [Arabidopsis thaliana] 73 5e-12
ref|NP_197360.1| putative protein; protein id: At5g18590.1 [Arab... 73 5e-12
>dbj|BAB03357.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 251
Score = 92.4 bits (228), Expect = 8e-18
Identities = 42/60 (70%), Positives = 50/60 (83%)
Frame = -2
Query: 916 GRRCTPEGVALVLCQSDPVLNDGQSGNEQSREAVIEEVRKRFIEKVVLDHEERDDDSSSD 737
G+RCTPE VAL LCQS+PVLNDGQSG + SR+ VIE VR++FIEKVV HEER++D SD
Sbjct: 192 GKRCTPESVALALCQSEPVLNDGQSGGDSSRDNVIEGVRRKFIEKVVAQHEEREEDDDSD 251
>ref|NP_196928.1| putative protein; protein id: At5g14240.1, supported by cDNA:
37589. [Arabidopsis thaliana] gi|11357553|pir||T48597
hypothetical protein F18O22.30 - Arabidopsis thaliana
gi|7573449|emb|CAB87763.1| putative protein [Arabidopsis
thaliana] gi|24030416|gb|AAN41366.1| unknown protein
[Arabidopsis thaliana]
Length = 256
Score = 85.9 bits (211), Expect = 8e-16
Identities = 40/59 (67%), Positives = 52/59 (87%), Gaps = 1/59 (1%)
Frame = -2
Query: 922 SFGRRCTPEGVALVLCQSDPVLNDGQSG-NEQSREAVIEEVRKRFIEKVVLDHEERDDD 749
SFGRRCTPE VAL+LCQS+PVLNDG+ G ++ SREAV+ VR++FIE+VV DHE++D+D
Sbjct: 191 SFGRRCTPESVALLLCQSEPVLNDGKGGDDDSSREAVMAGVRRQFIERVVKDHEDKDND 249
>gb|AAM65214.1| unknown [Arabidopsis thaliana]
Length = 256
Score = 85.1 bits (209), Expect = 1e-15
Identities = 40/59 (67%), Positives = 51/59 (85%), Gaps = 1/59 (1%)
Frame = -2
Query: 922 SFGRRCTPEGVALVLCQSDPVLNDGQSG-NEQSREAVIEEVRKRFIEKVVLDHEERDDD 749
SFGRRCTPE VAL+LCQS+PVLNDG+ G ++ SREAV+ VR++FIE+VV DHE+ D+D
Sbjct: 191 SFGRRCTPESVALLLCQSEPVLNDGKGGDDDSSREAVMAGVRRQFIERVVKDHEDNDND 249
>gb|AAM78582.1| RanGAP1 interacting protein [Arabidopsis thaliana]
Length = 708
Score = 73.2 bits (178), Expect = 5e-12
Identities = 38/72 (52%), Positives = 47/72 (64%)
Frame = +1
Query: 1 HSDNVRLEHDVXFLKAVLDDTQKELHSTRGVIARRKSSGHXQASVLKYLHSQXRDXQSTG 180
HSDNVRLEHDV FLKAVLDDTQKELHSTRGV+A ++ + +L + + ++
Sbjct: 640 HSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRA 699
Query: 181 KLEHLHPRKPFH 216
PRKPFH
Sbjct: 700 AT----PRKPFH 707
>ref|NP_197360.1| putative protein; protein id: At5g18590.1 [Arabidopsis thaliana]
Length = 792
Score = 73.2 bits (178), Expect = 5e-12
Identities = 38/72 (52%), Positives = 47/72 (64%)
Frame = +1
Query: 1 HSDNVRLEHDVXFLKAVLDDTQKELHSTRGVIARRKSSGHXQASVLKYLHSQXRDXQSTG 180
HSDNVRLEHDV FLKAVLDDTQKELHSTRGV+A ++ + +L + + ++
Sbjct: 724 HSDNVRLEHDVAFLKAVLDDTQKELHSTRGVLAGERARAFQLQVEVFHLKQRLQSLENRA 783
Query: 181 KLEHLHPRKPFH 216
PRKPFH
Sbjct: 784 AT----PRKPFH 791
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 715,320,819
Number of Sequences: 1393205
Number of extensions: 14485981
Number of successful extensions: 35326
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 33360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35296
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 51027805888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
