Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004647A_C01 KMC004647A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD40977.1| OSJNBa0072F16.1 [Oryza sativa (japonica cultivar... 33 2.5
pir||A44879 retinoblastoma protein - clawed frog gi|255082|gb|AA... 31 9.6
gb|AAL67859.1|AF465405_1 NADH:quinone oxidoreductase [Gloeophyll... 31 9.6
gb|AAL67860.1|AF465406_1 NADH:quinone oxidoreductase [Gloeophyll... 31 9.6
>emb|CAD40977.1| OSJNBa0072F16.1 [Oryza sativa (japonica cultivar-group)]
Length = 201
Score = 32.7 bits (73), Expect = 2.5
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -2
Query: 516 CMSMDKVI*LAVTNFKVYDWGLF 448
C++M ++ LAV NF V+DW LF
Sbjct: 175 CLAMSEIFKLAVMNFNVHDWNLF 197
>pir||A44879 retinoblastoma protein - clawed frog gi|255082|gb|AAB23173.1|
retinoblastoma protein, pXRb1 [Xenopus, Peptide, 899 aa]
Length = 899
Score = 30.8 bits (68), Expect = 9.6
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +1
Query: 25 IILIVNLIPN*ELEGRLQKL*SIREALLSPKSQLPNDPKRCLNSPSNPLFIGYKPTNT 198
II+ NL+ +L+ + + S R LSP +P P R NSP P I P T
Sbjct: 725 IIVFYNLVFMQKLKSHILQYGSARHPTLSPIPHIPRSPYRFGNSPKVPGNIYVSPLKT 782
>gb|AAL67859.1|AF465405_1 NADH:quinone oxidoreductase [Gloeophyllum trabeum]
Length = 257
Score = 30.8 bits (68), Expect = 9.6
Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 3/48 (6%)
Frame = +1
Query: 115 KSQLPNDPKRCLNSPSNPLFIGYKPTNTKPTN---SKPTLILGLYHNY 249
+S+ +P N+P+ P G KPT T+ T+ S P L + +Y Y
Sbjct: 21 RSRSAQEPAESTNTPAPPTSTGTKPTTTQTTDTTMSSPRLAIVIYTMY 68
>gb|AAL67860.1|AF465406_1 NADH:quinone oxidoreductase [Gloeophyllum trabeum]
Length = 257
Score = 30.8 bits (68), Expect = 9.6
Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 3/48 (6%)
Frame = +1
Query: 115 KSQLPNDPKRCLNSPSNPLFIGYKPTNTKPTN---SKPTLILGLYHNY 249
+S+ +P N+P+ P G KPT T+ T+ S P L + +Y Y
Sbjct: 21 RSRSAQEPAESTNTPAPPTSTGTKPTTTQTTDTTMSSPRLAIVIYTMY 68
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 418,499,193
Number of Sequences: 1393205
Number of extensions: 8829939
Number of successful extensions: 20321
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20203
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
