Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004645A_C01 KMC004645A_c01
(527 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200661.1| putative protein; protein id: At5g58530.1 [Arab... 141 5e-33
dbj|BAB68113.1| B1088C09.21 [Oryza sativa (japonica cultivar-gro... 106 1e-22
dbj|BAC15489.1| hypothetical protein~similar to Arabidopsis thal... 97 2e-19
ref|NP_189527.1| hypothetical protein; protein id: At3g28850.1 [... 94 8e-19
ref|NP_196885.1| putative protein; protein id: At5g13810.1, supp... 92 3e-18
>ref|NP_200661.1| putative protein; protein id: At5g58530.1 [Arabidopsis thaliana]
gi|10177031|dbj|BAB10269.1|
emb|CAB72177.1~gene_id:MQJ2.15~similar to unknown
protein [Arabidopsis thaliana]
gi|26449512|dbj|BAC41882.1| unknown protein [Arabidopsis
thaliana] gi|28950827|gb|AAO63337.1| At5g58530
[Arabidopsis thaliana]
Length = 273
Score = 141 bits (355), Expect = 5e-33
Identities = 58/85 (68%), Positives = 74/85 (86%)
Frame = -2
Query: 523 LPRVFIGGRYVGGAEEVRQMNEVGELKKILKALPEVDPAECDVCGGHRFVLCDECYGSRK 344
LPRVFIGGRY+GGAEEV+Q++E+GELKK+++ LP+++P C++CGGHRFV C +C+GS K
Sbjct: 181 LPRVFIGGRYIGGAEEVKQLHEIGELKKLVQELPKIEPGVCEMCGGHRFVPCKDCHGSHK 240
Query: 343 VFTEKAGFRVCIACNENGLVRCPSC 269
V TEK GFR C+ CNENGLVRC SC
Sbjct: 241 VHTEKLGFRTCLTCNENGLVRCSSC 265
>dbj|BAB68113.1| B1088C09.21 [Oryza sativa (japonica cultivar-group)]
gi|20160636|dbj|BAB89581.1| P0446G04.4 [Oryza sativa
(japonica cultivar-group)]
Length = 255
Score = 106 bits (265), Expect = 1e-22
Identities = 48/88 (54%), Positives = 62/88 (69%), Gaps = 2/88 (2%)
Frame = -2
Query: 526 TLPRVFIGGRYVGGAEEVRQMNEVGELKKILKALPEVDPAECDVCGGHRFVLCDECYGSR 347
TLP+VF+GGR++GGAEEVR+++E GEL++++ A C CGG R+VLC C GS
Sbjct: 163 TLPQVFVGGRHLGGAEEVRRLHESGELRRVVAGAGATAFAACSRCGGERYVLCGSCNGSH 222
Query: 346 KVFTEK--AGFRVCIACNENGLVRCPSC 269
K ++ K GFR C CNENGLVRCP C
Sbjct: 223 KRYSLKGGGGFRTCAGCNENGLVRCPDC 250
>dbj|BAC15489.1| hypothetical protein~similar to Arabidopsis thaliana chromosome 5,
At5g13810 [Oryza sativa (japonica cultivar-group)]
Length = 211
Score = 96.7 bits (239), Expect = 2e-19
Identities = 47/88 (53%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Frame = -2
Query: 526 TLPRVFIGGRYVGGAEEVRQMNEVGELKKILKALPEVDPA-ECDVCGGHRFVLCDECYGS 350
+LP++ +GGR VGGA+EV+Q++E G+L+++L DPA CD CGG RFV C C G
Sbjct: 122 SLPQLLVGGRLVGGADEVKQLHESGQLRRLLDGAAGQDPAYVCDGCGGVRFVPCTACGGG 181
Query: 349 RKVFTEKAG-FRVCIACNENGLVRCPSC 269
RKVF E+ + C CNENGLVRCP+C
Sbjct: 182 RKVFVEEEDRVQRCGDCNENGLVRCPNC 209
>ref|NP_189527.1| hypothetical protein; protein id: At3g28850.1 [Arabidopsis
thaliana] gi|11994793|dbj|BAB03183.1|
emb|CAB72177.1~gene_id:T19N8.15~similar to unknown
protein [Arabidopsis thaliana]
Length = 428
Score = 94.4 bits (233), Expect = 8e-19
Identities = 49/115 (42%), Positives = 65/115 (55%), Gaps = 27/115 (23%)
Frame = -2
Query: 526 TLPRVFIGGRYVGGAEEVRQMNEVGELKKILKALPEVDP------AECDVCGGHRFVLCD 365
TLPRVF+G +Y+GGAEE+R++NE G+L+K+L V+ EC+ CG RFV C+
Sbjct: 314 TLPRVFLGRKYIGGAEEIRKLNEDGKLEKLLGGCERVEENQNGNGLECEACGDVRFVPCE 373
Query: 364 ECYGSRKVFTE---------------------KAGFRVCIACNENGLVRCPSCFD 263
C GS KV+ E + GF+ C CNENGL+RCP C D
Sbjct: 374 TCSGSCKVYYEYEDDDDDDDEGDDDESVKEEREYGFQTCPDCNENGLIRCPVCCD 428
>ref|NP_196885.1| putative protein; protein id: At5g13810.1, supported by cDNA:
124023., supported by cDNA: gi_14532459, supported by
cDNA: gi_16974532 [Arabidopsis thaliana]
gi|10177647|dbj|BAB11109.1| contains similarity to
unknown protein~emb|CAB72177.1~gene_id:MAC12.24
[Arabidopsis thaliana] gi|14532460|gb|AAK63958.1|
AT5g13810/MAC12_24 [Arabidopsis thaliana]
gi|16974533|gb|AAL31176.1| AT5g13810/MAC12_24
[Arabidopsis thaliana] gi|21618248|gb|AAM67298.1|
unknown [Arabidopsis thaliana]
Length = 274
Score = 92.4 bits (228), Expect = 3e-18
Identities = 45/88 (51%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Frame = -2
Query: 526 TLPRVFIGGRYVGGAEEVRQMNEVGELKKILKALPEVDPA-ECDVCGGHRFVLCDECYGS 350
+LP+VFI G+YVGGA+ ++ + E+GEL KILK P P C CG RFV C C GS
Sbjct: 185 SLPQVFIMGKYVGGADVIKSLFEIGELAKILKEFPMRQPGFVCHCCGDIRFVPCSNCSGS 244
Query: 349 RKVFTE-KAGFRVCIACNENGLVRCPSC 269
+K+F E + + C CNENGL+RCP C
Sbjct: 245 KKLFDEDEDRVKRCPECNENGLIRCPDC 272
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,012,544
Number of Sequences: 1393205
Number of extensions: 11294760
Number of successful extensions: 61143
Number of sequences better than 10.0: 314
Number of HSP's better than 10.0 without gapping: 41705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57896
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
