Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004644A_C01 KMC004644A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62940.1| unknown [Arabidopsis thaliana] 129 2e-29
ref|NP_566659.1| expressed protein; protein id: At3g20320.1, sup... 129 2e-29
dbj|BAB63821.1| P0459B04.4 [Oryza sativa (japonica cultivar-grou... 105 3e-22
ref|NP_484225.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 55 7e-07
gb|ZP_00110825.1| hypothetical protein [Nostoc punctiforme] 53 3e-06
>gb|AAM62940.1| unknown [Arabidopsis thaliana]
Length = 363
Score = 129 bits (325), Expect = 2e-29
Identities = 65/76 (85%), Positives = 74/76 (96%)
Frame = -1
Query: 600 VESLTRSLTQASEDLRRVHSSVMTPENAELIQKSIYSLIFTLKNVENVSSDILGFTGDEA 421
VE LTRSLTQAS+DLR+V+SS+MTPEN ELIQKSIY+L++TLKNVE++SSDILGFTGDEA
Sbjct: 288 VECLTRSLTQASDDLRKVNSSIMTPENTELIQKSIYTLVYTLKNVESISSDILGFTGDEA 347
Query: 420 TRKNLKLLIKSLSRLL 373
TRKNLKLLIKSLSRLL
Sbjct: 348 TRKNLKLLIKSLSRLL 363
>ref|NP_566659.1| expressed protein; protein id: At3g20320.1, supported by cDNA:
17362., supported by cDNA: gi_15081675, supported by
cDNA: gi_20334839 [Arabidopsis thaliana]
gi|9294549|dbj|BAB02812.1|
dbj|BAA17049.1~gene_id:MQC12.6~similar to unknown
protein [Arabidopsis thaliana]
gi|15081676|gb|AAK82493.1| AT3g20320/MQC12_7
[Arabidopsis thaliana] gi|20334840|gb|AAM16176.1|
AT3g20320/MQC12_7 [Arabidopsis thaliana]
Length = 381
Score = 129 bits (325), Expect = 2e-29
Identities = 65/76 (85%), Positives = 74/76 (96%)
Frame = -1
Query: 600 VESLTRSLTQASEDLRRVHSSVMTPENAELIQKSIYSLIFTLKNVENVSSDILGFTGDEA 421
VE LTRSLTQAS+DLR+V+SS+MTPEN ELIQKSIY+L++TLKNVE++SSDILGFTGDEA
Sbjct: 306 VECLTRSLTQASDDLRKVNSSIMTPENTELIQKSIYTLVYTLKNVESISSDILGFTGDEA 365
Query: 420 TRKNLKLLIKSLSRLL 373
TRKNLKLLIKSLSRLL
Sbjct: 366 TRKNLKLLIKSLSRLL 381
>dbj|BAB63821.1| P0459B04.4 [Oryza sativa (japonica cultivar-group)]
gi|20160939|dbj|BAB89875.1| P0698H10.22 [Oryza sativa
(japonica cultivar-group)]
Length = 356
Score = 105 bits (263), Expect = 3e-22
Identities = 51/76 (67%), Positives = 67/76 (88%)
Frame = -1
Query: 600 VESLTRSLTQASEDLRRVHSSVMTPENAELIQKSIYSLIFTLKNVENVSSDILGFTGDEA 421
VE + + L AS DLRR+ SS++TPEN +LI++SI++LIFTLKN+E++SSDI GFTGD+A
Sbjct: 281 VEIIAKGLADASGDLRRLKSSMLTPENTDLIKQSIFTLIFTLKNIESISSDISGFTGDDA 340
Query: 420 TRKNLKLLIKSLSRLL 373
TR+N+KLLIKSLSRLL
Sbjct: 341 TRRNIKLLIKSLSRLL 356
>ref|NP_484225.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25532038|pir||AE1829
hypothetical protein alr0181 [imported] - Nostoc sp.
(strain PCC 7120) gi|17135159|dbj|BAB77705.1|
ORF_ID:alr0181~hypothetical protein [Nostoc sp. PCC
7120]
Length = 476
Score = 55.1 bits (131), Expect = 7e-07
Identities = 28/76 (36%), Positives = 48/76 (62%)
Frame = -1
Query: 600 VESLTRSLTQASEDLRRVHSSVMTPENAELIQKSIYSLIFTLKNVENVSSDILGFTGDEA 421
+E+L+ + QAS +LR S+ P+NA L+Q+++ S T +N + ++SD+ TGD
Sbjct: 312 LEALSANAAQASANLRNATESLNDPKNAVLLQQTLDSARLTFENTQKITSDLDELTGDPN 371
Query: 420 TRKNLKLLIKSLSRLL 373
R+NL+ L+ LS L+
Sbjct: 372 FRQNLRQLVNGLSGLV 387
>gb|ZP_00110825.1| hypothetical protein [Nostoc punctiforme]
Length = 479
Score = 53.1 bits (126), Expect = 3e-06
Identities = 27/76 (35%), Positives = 47/76 (61%)
Frame = -1
Query: 600 VESLTRSLTQASEDLRRVHSSVMTPENAELIQKSIYSLIFTLKNVENVSSDILGFTGDEA 421
+E+L+ + QAS +LR ++ P+N L+Q+++ S T +N + ++SD+ TGD
Sbjct: 305 LEALSANAAQASANLRDASKTLNDPKNVVLLQQTLDSARVTFENTQKITSDLDELTGDPN 364
Query: 420 TRKNLKLLIKSLSRLL 373
RKNL+ L+ LS L+
Sbjct: 365 FRKNLRQLVNGLSGLV 380
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,807,848
Number of Sequences: 1393205
Number of extensions: 9322179
Number of successful extensions: 19284
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 18862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19284
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
