Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004638A_C02 KMC004638A_c02
(657 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42527.1| putative WD-repeat protein [Arabidopsis thaliana] 192 3e-48
ref|NP_195052.1| fizzy-related (FZR), putative; protein id: At4g... 192 3e-48
ref|NP_195053.1| fizzy-related (FZR), putative; protein id: At4g... 192 3e-48
emb|CAA11819.1| hypothetical protein [Brassica napus] 192 3e-48
ref|NP_198109.1| fizzy-related (FZR), putative; protein id: At5g... 184 9e-46
>dbj|BAC42527.1| putative WD-repeat protein [Arabidopsis thaliana]
Length = 215
Score = 192 bits (489), Expect = 3e-48
Identities = 92/112 (82%), Positives = 101/112 (90%), Gaps = 1/112 (0%)
Frame = -2
Query: 656 THTGACLNTINTGSQVCALLWSKSERELLSSHGFTQNQLTLWKYPSMLKMAELNGHTSRV 477
THTGACLN+++TGSQVC+LLWSK+ERELLSSHGFTQNQLTLWKYPSM+KMAEL GHTSRV
Sbjct: 104 THTGACLNSVDTGSQVCSLLWSKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRV 163
Query: 476 LHMAQSPDGCTVASAAADETLRFWNVFGTPE-ASKPSPKRNREPFADFNRIR 324
L+MAQSPDGCTVASAA DETLRFWNVFG PE A K +PK EPF+ NRIR
Sbjct: 164 LYMAQSPDGCTVASAAGDETLRFWNVFGVPETAKKAAPKAVSEPFSHVNRIR 215
Score = 32.0 bits (71), Expect = 7.5
Identities = 23/80 (28%), Positives = 34/80 (41%), Gaps = 9/80 (11%)
Frame = -2
Query: 614 QVCALLWSKSERELLSSHGFTQNQLTLW------KYPSMLKMAELNGHTSRVLHMAQSP- 456
+VC L WS S ++L S G N + +W + + L HTS V +A P
Sbjct: 26 EVCGLKWSGSGQQLAS--GGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCPF 83
Query: 455 --DGCTVASAAADETLRFWN 402
+ D T++FWN
Sbjct: 84 QANLLATGGGGGDRTIKFWN 103
>ref|NP_195052.1| fizzy-related (FZR), putative; protein id: At4g33260.1, supported
by cDNA: gi_6491863 [Arabidopsis thaliana]
gi|7485655|pir||T05977 hypothetical protein F17M5.20 -
Arabidopsis thaliana gi|4490293|emb|CAB38784.1|
WD-repeat protein-like protein [Arabidopsis thaliana]
gi|6491864|gb|AAF14049.1|AF029263_1 putative cdc20
protein [Arabidopsis thaliana]
gi|7270274|emb|CAB80043.1| WD-repeat protein-like
protein [Arabidopsis thaliana]
Length = 447
Score = 192 bits (489), Expect = 3e-48
Identities = 92/112 (82%), Positives = 101/112 (90%), Gaps = 1/112 (0%)
Frame = -2
Query: 656 THTGACLNTINTGSQVCALLWSKSERELLSSHGFTQNQLTLWKYPSMLKMAELNGHTSRV 477
THTGACLN+++TGSQVC+LLWSK+ERELLSSHGFTQNQLTLWKYPSM+KMAEL GHTSRV
Sbjct: 336 THTGACLNSVDTGSQVCSLLWSKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRV 395
Query: 476 LHMAQSPDGCTVASAAADETLRFWNVFGTPE-ASKPSPKRNREPFADFNRIR 324
L+MAQSPDGCTVASAA DETLRFWNVFG PE A K +PK EPF+ NRIR
Sbjct: 396 LYMAQSPDGCTVASAAGDETLRFWNVFGVPETAKKAAPKAVAEPFSHVNRIR 447
Score = 32.0 bits (71), Expect = 7.5
Identities = 23/80 (28%), Positives = 34/80 (41%), Gaps = 9/80 (11%)
Frame = -2
Query: 614 QVCALLWSKSERELLSSHGFTQNQLTLW------KYPSMLKMAELNGHTSRVLHMAQSP- 456
+VC L WS S ++L S G N + +W + + L HTS V +A P
Sbjct: 258 EVCGLKWSGSGQQLAS--GGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCPF 315
Query: 455 --DGCTVASAAADETLRFWN 402
+ D T++FWN
Sbjct: 316 QANLLATGGGGGDRTIKFWN 335
>ref|NP_195053.1| fizzy-related (FZR), putative; protein id: At4g33270.1, supported
by cDNA: gi_6491861 [Arabidopsis thaliana]
gi|7446141|pir||T05978 hypothetical protein F17M5.30 -
Arabidopsis thaliana gi|4490294|emb|CAB38785.1|
WD-repeat protein-like protein [Arabidopsis thaliana]
gi|7270275|emb|CAB80044.1| WD-repeat protein-like
protein [Arabidopsis thaliana]
Length = 457
Score = 192 bits (489), Expect = 3e-48
Identities = 92/112 (82%), Positives = 101/112 (90%), Gaps = 1/112 (0%)
Frame = -2
Query: 656 THTGACLNTINTGSQVCALLWSKSERELLSSHGFTQNQLTLWKYPSMLKMAELNGHTSRV 477
THTGACLN+++TGSQVC+LLWSK+ERELLSSHGFTQNQLTLWKYPSM+KMAEL GHTSRV
Sbjct: 346 THTGACLNSVDTGSQVCSLLWSKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRV 405
Query: 476 LHMAQSPDGCTVASAAADETLRFWNVFGTPE-ASKPSPKRNREPFADFNRIR 324
L+MAQSPDGCTVASAA DETLRFWNVFG PE A K +PK EPF+ NRIR
Sbjct: 406 LYMAQSPDGCTVASAAGDETLRFWNVFGVPETAKKAAPKAVSEPFSHVNRIR 457
Score = 32.0 bits (71), Expect = 7.5
Identities = 23/80 (28%), Positives = 34/80 (41%), Gaps = 9/80 (11%)
Frame = -2
Query: 614 QVCALLWSKSERELLSSHGFTQNQLTLW------KYPSMLKMAELNGHTSRVLHMAQSP- 456
+VC L WS S ++L S G N + +W + + L HTS V +A P
Sbjct: 268 EVCGLKWSGSGQQLAS--GGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCPF 325
Query: 455 --DGCTVASAAADETLRFWN 402
+ D T++FWN
Sbjct: 326 QANLLATGGGGGDRTIKFWN 345
>emb|CAA11819.1| hypothetical protein [Brassica napus]
Length = 457
Score = 192 bits (488), Expect = 3e-48
Identities = 91/112 (81%), Positives = 101/112 (89%), Gaps = 1/112 (0%)
Frame = -2
Query: 656 THTGACLNTINTGSQVCALLWSKSERELLSSHGFTQNQLTLWKYPSMLKMAELNGHTSRV 477
THTGACLN+++TGSQVC+LLWSK+ERELLSSHGFTQNQLTLWKYPSM+KMAEL GHTSRV
Sbjct: 346 THTGACLNSVDTGSQVCSLLWSKNERELLSSHGFTQNQLTLWKYPSMVKMAELTGHTSRV 405
Query: 476 LHMAQSPDGCTVASAAADETLRFWNVFGTPE-ASKPSPKRNREPFADFNRIR 324
L+MAQSPDGCTVA+AA DETLRFWNVFG PE A K +PK EPF+ NRIR
Sbjct: 406 LYMAQSPDGCTVATAAGDETLRFWNVFGVPETAKKAAPKAAHEPFSHVNRIR 457
Score = 32.3 bits (72), Expect = 5.7
Identities = 23/80 (28%), Positives = 34/80 (41%), Gaps = 9/80 (11%)
Frame = -2
Query: 614 QVCALLWSKSERELLSSHGFTQNQLTLW------KYPSMLKMAELNGHTSRVLHMAQSP- 456
+VC L WS S ++L S G N + +W + + L HTS V +A P
Sbjct: 268 EVCGLKWSGSGQQLAS--GGNDNVVHIWDRSVASSNSTTQYLHRLEEHTSAVKALAWCPF 325
Query: 455 --DGCTVASAAADETLRFWN 402
+ D T++FWN
Sbjct: 326 QANLLATGGGGGDRTIKFWN 345
>ref|NP_198109.1| fizzy-related (FZR), putative; protein id: At5g27570.1 [Arabidopsis
thaliana]
Length = 411
Score = 184 bits (467), Expect = 9e-46
Identities = 89/113 (78%), Positives = 96/113 (84%), Gaps = 2/113 (1%)
Frame = -2
Query: 656 THTGACLNTINTGSQVCALLWSKSERELLSSHGFTQNQLTLWKYPSMLKMAELNGHTSRV 477
THTGACLN++ TGSQVC+LLWSKSERELLSSHGFTQNQLTLWKYPSM+KMAELNGHTSRV
Sbjct: 299 THTGACLNSVETGSQVCSLLWSKSERELLSSHGFTQNQLTLWKYPSMVKMAELNGHTSRV 358
Query: 476 LHMAQSPDGCTVASAAADETLRFWNVFGTP--EASKPSPKRNREPFADFNRIR 324
L MAQSPDGCTVASAA DETLR WNVFG P K + K+ +PFA N IR
Sbjct: 359 LFMAQSPDGCTVASAAGDETLRLWNVFGEPPKTTKKAASKKYTDPFAHVNHIR 411
Score = 31.6 bits (70), Expect = 9.7
Identities = 21/81 (25%), Positives = 36/81 (43%), Gaps = 10/81 (12%)
Frame = -2
Query: 614 QVCALLWSKSERELLSSHGFTQNQLTLWKY-------PSMLKMAELNGHTSRVLHMAQSP 456
+VC L WS+S ++L S G N + +W + P+ + HT+ V +A P
Sbjct: 220 EVCGLKWSESGKKLAS--GGNDNVVHIWDHRSVASSNPTRQWLHRFEEHTAAVRALAWCP 277
Query: 455 DGCTV---ASAAADETLRFWN 402
++ D ++FWN
Sbjct: 278 FQASLLATGGGVGDGKIKFWN 298
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 592,136,087
Number of Sequences: 1393205
Number of extensions: 13345920
Number of successful extensions: 42445
Number of sequences better than 10.0: 922
Number of HSP's better than 10.0 without gapping: 37409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42267
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
