Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004636A_C01 KMC004636A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL32135.1|AF284500_1 vernalization 2 protein [Arabidopsis th... 119 3e-26
ref|NP_199937.1| putative protein; protein id: At5g51240.1 [Arab... 119 4e-26
gb|AAM98227.1| unknown protein [Arabidopsis thaliana] 119 4e-26
dbj|BAB58956.1| embryonic flower 2 [Arabidopsis thaliana] gi|142... 119 4e-26
ref|NP_567517.1| Expressed protein; protein id: At4g16845.1, sup... 116 2e-25
>gb|AAL32135.1|AF284500_1 vernalization 2 protein [Arabidopsis thaliana]
Length = 445
Score = 119 bits (298), Expect = 3e-26
Identities = 49/76 (64%), Positives = 63/76 (82%)
Frame = -1
Query: 575 WNSFMRKQRVLADGHMPWACEAFSKLYGKELISSPALFWCWRLFMIKLWNHGLLDASSMN 396
WNSF+RKQRV+ADGH+ WACEAFS+ Y KEL +LFWCWRLF+IKLWNHGL+D++++N
Sbjct: 323 WNSFVRKQRVIADGHISWACEAFSRFYEKELHRYSSLFWCWRLFLIKLWNHGLVDSATIN 382
Query: 395 NCSKILDSFRNEGSDT 348
NC+ IL++ RN T
Sbjct: 383 NCNTILENCRNSSDTT 398
>ref|NP_199937.1| putative protein; protein id: At5g51240.1 [Arabidopsis thaliana]
gi|8843861|dbj|BAA97387.1| contains similarity to
fertilization-independent seed 2
protein~gene_id:MWD22.19 [Arabidopsis thaliana]
Length = 223
Score = 119 bits (297), Expect = 4e-26
Identities = 47/70 (67%), Positives = 60/70 (85%)
Frame = -1
Query: 575 WNSFMRKQRVLADGHMPWACEAFSKLYGKELISSPALFWCWRLFMIKLWNHGLLDASSMN 396
WNSF+RKQRVLADGH+PWACEAFS+L+G ++ +P L WCWR+FM+KLWNHGLLDA +MN
Sbjct: 153 WNSFVRKQRVLADGHIPWACEAFSRLHGPIMVRTPHLIWCWRVFMVKLWNHGLLDARTMN 212
Query: 395 NCSKILDSFR 366
NC+ L+ +
Sbjct: 213 NCNTFLEQLQ 222
>gb|AAM98227.1| unknown protein [Arabidopsis thaliana]
Length = 626
Score = 119 bits (297), Expect = 4e-26
Identities = 47/70 (67%), Positives = 60/70 (85%)
Frame = -1
Query: 575 WNSFMRKQRVLADGHMPWACEAFSKLYGKELISSPALFWCWRLFMIKLWNHGLLDASSMN 396
WNSF+RKQRVLADGH+PWACEAFS+L+G ++ +P L WCWR+FM+KLWNHGLLDA +MN
Sbjct: 556 WNSFVRKQRVLADGHIPWACEAFSRLHGPIMVRTPHLIWCWRVFMVKLWNHGLLDARTMN 615
Query: 395 NCSKILDSFR 366
NC+ L+ +
Sbjct: 616 NCNTFLEQLQ 625
>dbj|BAB58956.1| embryonic flower 2 [Arabidopsis thaliana]
gi|14276052|dbj|BAB58957.1| embryonic flower 2
[Arabidopsis thaliana]
Length = 631
Score = 119 bits (297), Expect = 4e-26
Identities = 47/70 (67%), Positives = 60/70 (85%)
Frame = -1
Query: 575 WNSFMRKQRVLADGHMPWACEAFSKLYGKELISSPALFWCWRLFMIKLWNHGLLDASSMN 396
WNSF+RKQRVLADGH+PWACEAFS+L+G ++ +P L WCWR+FM+KLWNHGLLDA +MN
Sbjct: 561 WNSFVRKQRVLADGHIPWACEAFSRLHGPIMVRTPHLIWCWRVFMVKLWNHGLLDARTMN 620
Query: 395 NCSKILDSFR 366
NC+ L+ +
Sbjct: 621 NCNTFLEQLQ 630
>ref|NP_567517.1| Expressed protein; protein id: At4g16845.1, supported by cDNA:
gi_14334421, supported by cDNA: gi_16945787, supported
by cDNA: gi_17104664 [Arabidopsis thaliana]
gi|14334422|gb|AAK59409.1| unknown protein [Arabidopsis
thaliana] gi|17104665|gb|AAL34221.1| unknown protein
[Arabidopsis thaliana]
Length = 440
Score = 116 bits (290), Expect = 2e-25
Identities = 47/71 (66%), Positives = 61/71 (85%)
Frame = -1
Query: 575 WNSFMRKQRVLADGHMPWACEAFSKLYGKELISSPALFWCWRLFMIKLWNHGLLDASSMN 396
WNSF+RKQRV+ADGH+ WACE FS+ Y KEL +LFWCWRLF+IKLWNHGL+D++++N
Sbjct: 323 WNSFVRKQRVIADGHISWACEVFSRFYEKELHCYSSLFWCWRLFLIKLWNHGLVDSATIN 382
Query: 395 NCSKILDSFRN 363
NC+ IL++ RN
Sbjct: 383 NCNTILENCRN 393
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,908,924
Number of Sequences: 1393205
Number of extensions: 9753125
Number of successful extensions: 20808
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 20379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20804
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
