Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004612A_C01 KMC004612A_c01
(764 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM67048.1| unknown [Arabidopsis thaliana] 54 3e-06
ref|NP_567947.1| Expressed protein; protein id: At4g33985.1, sup... 54 3e-06
gb|AAO24541.1| At4g33985 [Arabidopsis thaliana] 54 3e-06
ref|NP_172356.1| hypothetical protein; protein id: At1g08790.1 [... 49 8e-05
ref|NP_187121.1| hypothetical protein; protein id: At3g04700.1 [... 46 5e-04
>gb|AAM67048.1| unknown [Arabidopsis thaliana]
Length = 154
Score = 53.5 bits (127), Expect = 3e-06
Identities = 34/70 (48%), Positives = 44/70 (62%)
Frame = -3
Query: 762 VNKSYSESRFHKPPTATAPSSSAASDRESTPSPISSPRTAIFGTDDDPQTVKTRLRQWAQ 583
VNK YS SR + T+ SS AS+ E+ S+ T I DDP+T+K RL+QWAQ
Sbjct: 91 VNKQYS-SRLSR----TSSLSSIASEGEN-----SNSSTTIVDQGDDPETMKLRLKQWAQ 140
Query: 582 VVACAVRQSS 553
VVAC+V+Q S
Sbjct: 141 VVACSVKQFS 150
>ref|NP_567947.1| Expressed protein; protein id: At4g33985.1, supported by cDNA:
9341. [Arabidopsis thaliana]
Length = 154
Score = 53.5 bits (127), Expect = 3e-06
Identities = 34/70 (48%), Positives = 44/70 (62%)
Frame = -3
Query: 762 VNKSYSESRFHKPPTATAPSSSAASDRESTPSPISSPRTAIFGTDDDPQTVKTRLRQWAQ 583
VNK YS SR + T+ SS AS+ E+ S+ T I DDP+T+K RL+QWAQ
Sbjct: 91 VNKQYS-SRLSR----TSSLSSIASEGEN-----SNSSTTIVDQGDDPETMKLRLKQWAQ 140
Query: 582 VVACAVRQSS 553
VVAC+V+Q S
Sbjct: 141 VVACSVKQFS 150
>gb|AAO24541.1| At4g33985 [Arabidopsis thaliana]
Length = 154
Score = 53.5 bits (127), Expect = 3e-06
Identities = 34/70 (48%), Positives = 44/70 (62%)
Frame = -3
Query: 762 VNKSYSESRFHKPPTATAPSSSAASDRESTPSPISSPRTAIFGTDDDPQTVKTRLRQWAQ 583
VNK YS SR + T+ SS AS+ E+ S+ T I DDP+T+K RL+QWAQ
Sbjct: 91 VNKQYS-SRLSR----TSSLSSIASEGEN-----SNSSTTIVDQGDDPETMKLRLKQWAQ 140
Query: 582 VVACAVRQSS 553
VVAC+V+Q S
Sbjct: 141 VVACSVKQFS 150
>ref|NP_172356.1| hypothetical protein; protein id: At1g08790.1 [Arabidopsis
thaliana] gi|7485992|pir||T00735 hypothetical protein
F22O13.30 - Arabidopsis thaliana
gi|9802566|gb|AAF99768.1|AC003981_18 F22O13.28
[Arabidopsis thaliana]
Length = 190
Score = 48.9 bits (115), Expect = 8e-05
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = -3
Query: 720 TATAPSSSAASDREST-PSPIS-SPRTAIFGTDDDPQTVKTRLRQWAQVVACAVRQSS 553
++++ ++ DR S+ SPIS S + DDPQ VKTRLR WAQ VAC+V QSS
Sbjct: 132 SSSSSRPTSLGDRSSSFGSPISDSDSLKVMSPGDDPQQVKTRLRHWAQAVACSVIQSS 189
>ref|NP_187121.1| hypothetical protein; protein id: At3g04700.1 [Arabidopsis
thaliana] gi|6175172|gb|AAF04898.1|AC011437_13
hypothetical protein [Arabidopsis thaliana]
Length = 191
Score = 46.2 bits (108), Expect = 5e-04
Identities = 27/62 (43%), Positives = 35/62 (55%), Gaps = 5/62 (8%)
Frame = -3
Query: 726 PPTATAPSSSAASDRESTPSPISSPRT-----AIFGTDDDPQTVKTRLRQWAQVVACAVR 562
P +++ SSSA++ S P S +T I DDPQ +K RLR WAQ VAC+V
Sbjct: 129 PSPSSSRSSSASASTFSYSIPCSPKKTDSDSVKILCPGDDPQQMKQRLRHWAQAVACSVM 188
Query: 561 QS 556
QS
Sbjct: 189 QS 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 636,494,495
Number of Sequences: 1393205
Number of extensions: 13729117
Number of successful extensions: 52309
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 45276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51819
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37254821786
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
