Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004611A_C01 KMC004611A_c01
(496 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK14326.1|AF325506_1 APETAL2-like protein [Pisum sativum] 163 1e-39
gb|AAL57045.2|AF332215_1 transcription factor AHAP2 [Malus x dom... 115 3e-25
gb|AAD39439.1|AF132001_1 PHAP2A protein [Petunia x hybrida] 96 2e-19
gb|AAO52747.1| LIPLESS2 [Antirrhinum majus] 64 1e-09
gb|AAO52746.1| LIPLESS1 [Antirrhinum majus] 60 1e-08
>gb|AAK14326.1|AF325506_1 APETAL2-like protein [Pisum sativum]
Length = 533
Score = 163 bits (412), Expect = 1e-39
Identities = 90/147 (61%), Positives = 107/147 (72%), Gaps = 9/147 (6%)
Frame = -3
Query: 494 PKLMSILPKPLHRSN------KEVHGESEALRMLSQTHLHSSASNEMQRYVPYRSSGESP 333
PKL++ILPKP +R N +++HGE+EALRMLSQTHL SS+ N + RY S +
Sbjct: 390 PKLVNILPKPYNRPNNMEPYGRDLHGENEALRMLSQTHLQSSSPNGIHRYGSLSRSTTN- 448
Query: 332 MFHNFAHIH--PPNFHFPSSSYGGRVGSDLSLSSSDH-QHLQQWQSGPPHYLATAAASSG 162
H+FAH + PPNFHFPSSSYGGRVGSDLSLS+++H Q QQWQ G + + AAASSG
Sbjct: 449 -VHSFAHTNHQPPNFHFPSSSYGGRVGSDLSLSTNNHQQQQQQWQPGSHYLSSAAAASSG 507
Query: 161 FPPQIIRPSSSQGWLQKNGFHTLKRPS 81
FPPQ IR SSQ WL KNGFHTL RPS
Sbjct: 508 FPPQ-IRTPSSQTWLHKNGFHTLMRPS 533
>gb|AAL57045.2|AF332215_1 transcription factor AHAP2 [Malus x domestica]
Length = 549
Score = 115 bits (287), Expect = 3e-25
Identities = 67/131 (51%), Positives = 89/131 (67%), Gaps = 10/131 (7%)
Frame = -3
Query: 449 KEVHGESEALRMLSQTHLHSSASNEMQRYVPYR---SSGESPMFHNFA-HIHPPNFH--- 291
++ + ESEA+++L +T+L S A E+ +Y + ++G+ M HNF + + PN+H
Sbjct: 420 RDGYSESEAMQLLLRTNLQSQAPAEVHKYGQFNRRLTAGDIQMSHNFPPNFNSPNYHHIQ 479
Query: 290 FPSSSYGG-RVGSDLSLSSSDHQHLQQWQSGPP--HYLATAAASSGFPPQIIRPSSSQGW 120
FPSSS GG R+GSDLSLS+SDHQ QQWQS P + ATAAASSGFPPQ+ + W
Sbjct: 480 FPSSSEGGGRIGSDLSLSTSDHQ--QQWQSATPTSNLFATAAASSGFPPQLRPLPTQNSW 537
Query: 119 LQKNGFHTLKR 87
LQKNGFHTL R
Sbjct: 538 LQKNGFHTLAR 548
>gb|AAD39439.1|AF132001_1 PHAP2A protein [Petunia x hybrida]
Length = 519
Score = 95.9 bits (237), Expect = 2e-19
Identities = 66/139 (47%), Positives = 79/139 (56%), Gaps = 19/139 (13%)
Frame = -3
Query: 440 HGESEALRMLSQTHLHSSAS------NEMQRYVPYRSSGESPMFHNFAHIHPPNF----- 294
+ ESE L++LS+THLHS S +++QR+ Y GES M F PP F
Sbjct: 390 YNESETLQLLSKTHLHSPVSLKHNNSHQLQRFGQYMRPGESHMIQMF----PPQFGSSNY 445
Query: 293 --HFPSSSYGGRVGS----DLSLSSSDHQHLQQWQSG-PPHYLATAAASSGFPPQIIRPS 135
FPS S GGR+G+ DLSLSSS+ QWQS PP A AAASSGF QI+RP
Sbjct: 446 QIQFPSGSNGGRIGATNVGDLSLSSSNAS--SQWQSNLPPQIFAAAAASSGFSQQIVRP- 502
Query: 134 SSQGWLQKNGF-HTLKRPS 81
Q W +NGF H L RPS
Sbjct: 503 --QNWSSENGFHHFLMRPS 519
>gb|AAO52747.1| LIPLESS2 [Antirrhinum majus]
Length = 505
Score = 63.5 bits (153), Expect = 1e-09
Identities = 54/150 (36%), Positives = 71/150 (47%), Gaps = 30/150 (20%)
Frame = -3
Query: 440 HGESEALRMLSQTHLHS--SASNEMQRYVPYRSSGESPMFHNFA------HIHPPNFHFP 285
+ E+E L++LSQTHLHS +NEM R+ + E M ++ + H + H
Sbjct: 361 YNETETLQLLSQTHLHSPLKVNNEMHRFGQLGKANEPQMLQMYSKPYAPQNYHQIHHHHQ 420
Query: 284 SSSYGGRVGSDLSL---------------SSSDHQHLQQWQSGPPHYLATAAASSGFP-- 156
+ G GS S +SS ++ QQWQ H AAASSGFP
Sbjct: 421 QQQFQGGGGSSSSTTNVVINGKSVGGVGEASSVSRNEQQWQMNYHHQF--AAASSGFPQA 478
Query: 155 -PQIIRPSSSQGWLQ--KNGFH--TLKRPS 81
QII+P Q WLQ KNG H TL RP+
Sbjct: 479 QAQIIKP---QNWLQIKKNGIHPSTLMRPT 505
>gb|AAO52746.1| LIPLESS1 [Antirrhinum majus]
Length = 505
Score = 60.5 bits (145), Expect = 1e-08
Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 18/145 (12%)
Frame = -3
Query: 476 LPKPLHRSNKEVHGESEALRMLSQTHLHS----SASNEMQRYVPYRSSGESPMFHNF--- 318
+ P R N + E+E L++LSQTHL+S A++E R+ + E M F
Sbjct: 358 IDNPRRRDNG--YSETETLQLLSQTHLNSPGMLKANDERHRFGQLGKTHEPHMIQMFNTP 415
Query: 317 ---AHIHPPNFHFPSSSYGGRVGSDLSLSSSDHQHL-----QQWQSGPPHYLATAAASSG 162
+ H +FP++ G V +++ + + QQWQ A+AAASSG
Sbjct: 416 FTSQNYHQIYHNFPAA--GASVSGSRNVNGGEFNNYVARNEQQWQMNHHQLFASAAASSG 473
Query: 161 FP--PQIIRPSSSQGW-LQKNGFHT 96
FP P ++ S + W LQKNGFH+
Sbjct: 474 FPHAPPLLSSSRPRDWPLQKNGFHS 498
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,534,949
Number of Sequences: 1393205
Number of extensions: 10485313
Number of successful extensions: 27162
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 26217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27109
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
