Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004608A_C01 KMC004608A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568795.1| expressed protein; protein id: At5g53620.1, sup... 215 2e-55
dbj|BAB09738.1| gene_id:MNC6.16~unknown protein [Arabidopsis tha... 215 2e-55
pir||T14867 interaptin - slime mold (Dictyostelium discoideum) g... 52 4e-06
gb|AAD46501.1|AF148805_6 latent nuclear antigen [Human herpesvir... 52 5e-06
gb|AAB62657.1| ORF 73, contains large complex repeat CR 73 [Huma... 52 5e-06
>ref|NP_568795.1| expressed protein; protein id: At5g53620.1, supported by cDNA:
gi_15451043 [Arabidopsis thaliana]
gi|15451044|gb|AAK96793.1| Unknown protein [Arabidopsis
thaliana]
Length = 682
Score = 215 bits (548), Expect = 2e-55
Identities = 103/157 (65%), Positives = 135/157 (85%)
Frame = +3
Query: 27 KSSIIARSEIMEMRSTFDAQVKEHANNTSRLQEQLCERDQTILELERRMEEKDRELHTIK 206
++ +IAR EIME++S +++Q E+AN +R+QEQL E +++I E ER++EEKDRELH IK
Sbjct: 95 RAQMIARHEIMEIQSNYESQFTEYANAAARMQEQLHENERSIREAERKLEEKDRELHAIK 154
Query: 207 LDNEAAWAKQDLLREQSKELATFRRERDHAEAERAQHIKQIHDLQEHIQEKDRQLIELQD 386
LDNEAAWAK+ +LREQ+KELATFRRERDH+EAER+Q+I +I +LQEHIQEK+ QL ELQ+
Sbjct: 155 LDNEAAWAKEGILREQNKELATFRRERDHSEAERSQNIHKISELQEHIQEKESQLSELQE 214
Query: 387 QNRVAQETIMIKDEQVREAQAWIARVREMDVFQSTTN 497
QNR+AQETI+ KDEQ+REAQ WIAR +E+D QS+TN
Sbjct: 215 QNRIAQETILYKDEQLREAQGWIARAQEIDALQSSTN 251
>dbj|BAB09738.1| gene_id:MNC6.16~unknown protein [Arabidopsis thaliana]
Length = 720
Score = 215 bits (548), Expect = 2e-55
Identities = 103/157 (65%), Positives = 135/157 (85%)
Frame = +3
Query: 27 KSSIIARSEIMEMRSTFDAQVKEHANNTSRLQEQLCERDQTILELERRMEEKDRELHTIK 206
++ +IAR EIME++S +++Q E+AN +R+QEQL E +++I E ER++EEKDRELH IK
Sbjct: 133 RAQMIARHEIMEIQSNYESQFTEYANAAARMQEQLHENERSIREAERKLEEKDRELHAIK 192
Query: 207 LDNEAAWAKQDLLREQSKELATFRRERDHAEAERAQHIKQIHDLQEHIQEKDRQLIELQD 386
LDNEAAWAK+ +LREQ+KELATFRRERDH+EAER+Q+I +I +LQEHIQEK+ QL ELQ+
Sbjct: 193 LDNEAAWAKEGILREQNKELATFRRERDHSEAERSQNIHKISELQEHIQEKESQLSELQE 252
Query: 387 QNRVAQETIMIKDEQVREAQAWIARVREMDVFQSTTN 497
QNR+AQETI+ KDEQ+REAQ WIAR +E+D QS+TN
Sbjct: 253 QNRIAQETILYKDEQLREAQGWIARAQEIDALQSSTN 289
>pir||T14867 interaptin - slime mold (Dictyostelium discoideum)
gi|3549261|gb|AAC34582.1| interaptin [Dictyostelium
discoideum]
Length = 1738
Score = 52.0 bits (123), Expect = 4e-06
Identities = 27/110 (24%), Positives = 61/110 (54%)
Frame = +3
Query: 117 LQEQLCERDQTILELERRMEEKDRELHTIKLDNEAAWAKQDLLREQSKELATFRRERDHA 296
+Q+ L + Q E E+++ EKD +L +I+ +N+ K+ L E+ ++L + ++ +
Sbjct: 1216 IQQDLNQLKQENQEKEKQLSEKDEKLQSIQFENQE---KEKQLSEKDEKLQSIQQNLNQL 1272
Query: 297 EAERAQHIKQIHDLQEHIQEKDRQLIELQDQNRVAQETIMIKDEQVREAQ 446
E + +KQ + E +Q + L +L+ +N+ ++ + KDE+++ Q
Sbjct: 1273 NDENQEKVKQFSEKDEKLQSIQQDLNQLKQENQEKEKQLSEKDEKLQSIQ 1322
Score = 42.4 bits (98), Expect = 0.003
Identities = 28/120 (23%), Positives = 60/120 (49%), Gaps = 11/120 (9%)
Frame = +3
Query: 120 QEQLCERDQTIL-------ELERRMEEKDRELHTIKLD----NEAAWAKQDLLREQSKEL 266
++QL E+D+ + E E+++ EKD +L +I+ + N+ K E+ ++L
Sbjct: 1231 EKQLSEKDEKLQSIQFENQEKEKQLSEKDEKLQSIQQNLNQLNDENQEKVKQFSEKDEKL 1290
Query: 267 ATFRRERDHAEAERAQHIKQIHDLQEHIQEKDRQLIELQDQNRVAQETIMIKDEQVREAQ 446
+ +++ + + E + KQ+ + E +Q + L +L D E + K+EQ+ + Q
Sbjct: 1291 QSIQQDLNQLKQENQEKEKQLSEKDEKLQSIQQDLNQLNDDQIKKNEKLKEKEEQLLKLQ 1350
Score = 39.7 bits (91), Expect = 0.019
Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Frame = +3
Query: 93 EHANNTSRLQEQLCERDQTILELERRMEEKDRELHTIKLDNEAAWAKQDLLREQSKELAT 272
E N +LQ QL E+ Q + ++ EKD++L+ + NE+ K+ L++QS E
Sbjct: 1063 EKENQIQQLQSQLNEQRQ---QQSNQLSEKDQQLNQLIEKNESD-QKEQQLKQQSIENDL 1118
Query: 273 FRRERDHAEAERAQHIKQIHDLQEHIQEKDRQLIELQDQNRVAQETIM-IKDEQVREAQA 449
+E + + + + LQ + + +++EL+ Q + Q ++ + DE+ ++ +
Sbjct: 1119 IEKENQIQQLQ--LQLNEQRQLQSEVSIDNDKILELEKQLKQCQSDLLKLNDEKQQQDKQ 1176
Query: 450 WIARVREMDVFQSTTN 497
+ E D Q T N
Sbjct: 1177 LQDKQIEFDQLQLTFN 1192
Score = 37.7 bits (86), Expect = 0.072
Identities = 26/122 (21%), Positives = 65/122 (52%), Gaps = 1/122 (0%)
Frame = +3
Query: 84 QVKEHANNTSRLQEQLCERD-QTILELERRMEEKDRELHTIKLDNEAAWAKQDLLREQSK 260
++KE +LQ+ ++ Q + +LE ++ EK+ +L +K +NE Q ++QS
Sbjct: 1338 KLKEKEEQLLKLQQDFNDQQSQQLKQLEEKLSEKENQLQQLKQENEINQLNQ---QQQSN 1394
Query: 261 ELATFRRERDHAEAERAQHIKQIHDLQEHIQEKDRQLIELQDQNRVAQETIMIKDEQVRE 440
E+ ++ +D ++ Q +Q ++ ++ I+ +++ +L+ Q + Q + K+ +++
Sbjct: 1395 EI--IQQLKDQLLKQQQQE-QQENNNEKEIERLIQEIEQLKQQQEIDQSELSNKEIKIQT 1451
Query: 441 AQ 446
Q
Sbjct: 1452 TQ 1453
Score = 37.4 bits (85), Expect = 0.094
Identities = 30/134 (22%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Frame = +3
Query: 93 EHANNTSRLQEQLCERDQTILELERRMEEKDRELHTIKLDNEAAWA--KQDL--LREQSK 260
E +LQ++ E DQ L + +KD + ++ D + +QDL L+++++
Sbjct: 1169 EKQQQDKQLQDKQIEFDQLQLTFNQFKNDKDSQFIQLQDDQKQQLQSIQQDLNQLKQENQ 1228
Query: 261 ELATFRRERDHA----EAERAQHIKQIHDLQEHIQEKDRQLIELQDQNRVAQETIMIKDE 428
E E+D + E + KQ+ + E +Q + L +L D+N+ + KDE
Sbjct: 1229 EKEKQLSEKDEKLQSIQFENQEKEKQLSEKDEKLQSIQQNLNQLNDENQEKVKQFSEKDE 1288
Query: 429 QVREAQAWIARVRE 470
+++ Q + ++++
Sbjct: 1289 KLQSIQQDLNQLKQ 1302
>gb|AAD46501.1|AF148805_6 latent nuclear antigen [Human herpesvirus 8]
Length = 1129
Score = 51.6 bits (122), Expect = 5e-06
Identities = 34/135 (25%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Frame = +3
Query: 51 EIMEMRSTFDAQVKEHANNTSRLQEQ---LCERDQTILELERRMEEKDRELHTIKLDNEA 221
E+ E + Q +E L+EQ L E++Q + E E+ +EE+++EL + + E
Sbjct: 739 ELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEE 798
Query: 222 AWAKQDLLREQSKELATFRRERDHAEAERAQHIKQIHDLQEHIQEKDRQLIELQDQNRVA 401
++ L EQ +EL +E++ E E+ Q ++++ + ++ +E++ + +E Q+Q +
Sbjct: 799 ---QEQELEEQEQELE--EQEQELEEQEQEQELEEVEEQEQEQEEQELEEVEEQEQEQEE 853
Query: 402 QETIMIKDEQVREAQ 446
QE +++ + +E Q
Sbjct: 854 QEEQELEEVEEQEEQ 868
Score = 49.7 bits (117), Expect = 2e-05
Identities = 33/133 (24%), Positives = 70/133 (51%)
Frame = +3
Query: 78 DAQVKEHANNTSRLQEQLCERDQTILELERRMEEKDRELHTIKLDNEAAWAKQDLLREQS 257
+ Q ++ QEQ E++Q + E E+ +EE+++EL + + E ++ L EQ
Sbjct: 702 EEQEQQEEQEQQEEQEQQEEQEQELEEQEQELEEQEQELEEQEQELEE---QEQELEEQE 758
Query: 258 KELATFRRERDHAEAERAQHIKQIHDLQEHIQEKDRQLIELQDQNRVAQETIMIKDEQVR 437
+EL +E + E E + +++ + ++ ++E++++L E Q+Q QE + + EQ
Sbjct: 759 QELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQEL-EEQEQELEEQEQELEEQEQEL 817
Query: 438 EAQAWIARVREMD 476
E Q + E++
Sbjct: 818 EEQEQEQELEEVE 830
Score = 49.3 bits (116), Expect = 2e-05
Identities = 39/136 (28%), Positives = 71/136 (51%), Gaps = 4/136 (2%)
Frame = +3
Query: 51 EIMEMRSTFDAQVKEHANNTSRLQEQ---LCERDQTILELERRMEEKDRELHTIKLDNEA 221
E+ E + Q +E L+EQ L E++Q + E E+ +EE+++EL + + E
Sbjct: 725 ELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEE 784
Query: 222 AWAKQDLLREQSKELATFRRERDHAEAERAQHIKQIHDLQEHIQEKDRQLIELQDQNRVA 401
++ L EQ +EL +E + E E + Q +L+E QE++ + +E Q+Q +
Sbjct: 785 ---QEQELEEQEQELEEQEQELEEQEQELEE---QEQELEEQEQEQELEEVEEQEQEQEE 838
Query: 402 QETIMIKD-EQVREAQ 446
QE +++ EQ +E Q
Sbjct: 839 QELEEVEEQEQEQEEQ 854
Score = 48.9 bits (115), Expect = 3e-05
Identities = 28/144 (19%), Positives = 76/144 (52%)
Frame = +3
Query: 45 RSEIMEMRSTFDAQVKEHANNTSRLQEQLCERDQTILELERRMEEKDRELHTIKLDNEAA 224
+ E E + + +++E +++L E++Q + E E+ +EE+++EL + + E
Sbjct: 712 QQEEQEQQEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEE- 770
Query: 225 WAKQDLLREQSKELATFRRERDHAEAERAQHIKQIHDLQEHIQEKDRQLIELQDQNRVAQ 404
++ L EQ +EL +E + E E + +++ + ++ ++E++++L E + + Q
Sbjct: 771 --QEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQE----Q 824
Query: 405 ETIMIKDEQVREAQAWIARVREMD 476
E +++++ + + + V E +
Sbjct: 825 ELEEVEEQEQEQEEQELEEVEEQE 848
>gb|AAB62657.1| ORF 73, contains large complex repeat CR 73 [Human herpesvirus 8]
Length = 1089
Score = 51.6 bits (122), Expect = 5e-06
Identities = 34/135 (25%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Frame = +3
Query: 51 EIMEMRSTFDAQVKEHANNTSRLQEQ---LCERDQTILELERRMEEKDRELHTIKLDNEA 221
E+ E + Q +E L+EQ L E++Q + E E+ +EE+++EL + + E
Sbjct: 699 ELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEE 758
Query: 222 AWAKQDLLREQSKELATFRRERDHAEAERAQHIKQIHDLQEHIQEKDRQLIELQDQNRVA 401
++ L EQ +EL +E++ E E+ Q ++++ + ++ +E++ + +E Q+Q +
Sbjct: 759 ---QEQELEEQEQELE--EQEQELEEQEQEQELEEVEEQEQEQEEQELEEVEEQEQEQEE 813
Query: 402 QETIMIKDEQVREAQ 446
QE +++ + +E Q
Sbjct: 814 QEEQELEEVEEQEEQ 828
Score = 51.6 bits (122), Expect = 5e-06
Identities = 37/145 (25%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Frame = +3
Query: 51 EIMEMRSTFDAQVKEHANNTSRLQEQ---LCERDQTILELERRMEEKDRELHTIKLDNEA 221
E+ E + Q +E L+EQ L E++Q + E E+ +EE+++EL + + E
Sbjct: 650 ELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEE 709
Query: 222 AWAKQDLLREQSKELATFRRERDHAEAERAQHIKQIHDLQEHIQEKDRQLIELQDQNRVA 401
++ L EQ +EL +E + E E + +++ + ++ ++E++++L E Q+Q
Sbjct: 710 ---QEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQEL-EEQEQELEE 765
Query: 402 QETIMIKDEQVREAQAWIARVREMD 476
QE + + EQ E Q + E++
Sbjct: 766 QEQELEEQEQELEEQEQEQELEEVE 790
Score = 50.1 bits (118), Expect = 1e-05
Identities = 31/129 (24%), Positives = 70/129 (54%)
Frame = +3
Query: 60 EMRSTFDAQVKEHANNTSRLQEQLCERDQTILELERRMEEKDRELHTIKLDNEAAWAKQD 239
E + + +++E +++L E++Q + E E+ +EE+++EL + + E ++
Sbjct: 642 EQQEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEE---QEQ 698
Query: 240 LLREQSKELATFRRERDHAEAERAQHIKQIHDLQEHIQEKDRQLIELQDQNRVAQETIMI 419
L EQ +EL +E + E E + +++ + ++ ++E++++L E Q+Q QE +
Sbjct: 699 ELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQEL-EEQEQELEEQEQELE 757
Query: 420 KDEQVREAQ 446
+ EQ E Q
Sbjct: 758 EQEQELEEQ 766
Score = 50.1 bits (118), Expect = 1e-05
Identities = 32/134 (23%), Positives = 71/134 (52%)
Frame = +3
Query: 45 RSEIMEMRSTFDAQVKEHANNTSRLQEQLCERDQTILELERRMEEKDRELHTIKLDNEAA 224
+ E E + + Q ++ +++L E++Q + E E+ +EE+++EL + + E
Sbjct: 623 QQEEQEQQEEQEQQEEQEQEQQEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEE- 681
Query: 225 WAKQDLLREQSKELATFRRERDHAEAERAQHIKQIHDLQEHIQEKDRQLIELQDQNRVAQ 404
++ L EQ +EL +E + E E + +++ + ++ ++E++++L E Q+Q Q
Sbjct: 682 --QEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQEL-EEQEQELEEQ 738
Query: 405 ETIMIKDEQVREAQ 446
E + + EQ E Q
Sbjct: 739 EQELEEQEQELEEQ 752
Score = 49.3 bits (116), Expect = 2e-05
Identities = 39/136 (28%), Positives = 71/136 (51%), Gaps = 4/136 (2%)
Frame = +3
Query: 51 EIMEMRSTFDAQVKEHANNTSRLQEQ---LCERDQTILELERRMEEKDRELHTIKLDNEA 221
E+ E + Q +E L+EQ L E++Q + E E+ +EE+++EL + + E
Sbjct: 685 ELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEE 744
Query: 222 AWAKQDLLREQSKELATFRRERDHAEAERAQHIKQIHDLQEHIQEKDRQLIELQDQNRVA 401
++ L EQ +EL +E + E E + Q +L+E QE++ + +E Q+Q +
Sbjct: 745 ---QEQELEEQEQELEEQEQELEEQEQELEE---QEQELEEQEQEQELEEVEEQEQEQEE 798
Query: 402 QETIMIKD-EQVREAQ 446
QE +++ EQ +E Q
Sbjct: 799 QELEEVEEQEQEQEEQ 814
Score = 48.5 bits (114), Expect = 4e-05
Identities = 32/148 (21%), Positives = 76/148 (50%), Gaps = 6/148 (4%)
Frame = +3
Query: 51 EIMEMRSTFDAQVKEHANNTSRLQEQ---LCERDQTILELERRMEEKDRELHTIKLDNEA 221
E+ E + Q +E L+EQ L E++Q + E E+ +EE+++EL + + E
Sbjct: 664 ELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEE 723
Query: 222 AWAKQDLLREQSKELATFRRERDHAEAERAQHIKQIHDLQEHIQEKDRQLIELQ---DQN 392
++ L EQ +EL +E + E E + +++ + ++ ++E++++L E + ++
Sbjct: 724 ---QEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQ 780
Query: 393 RVAQETIMIKDEQVREAQAWIARVREMD 476
QE +++++ + + + V E +
Sbjct: 781 EQEQELEEVEEQEQEQEEQELEEVEEQE 808
Score = 46.6 bits (109), Expect = 2e-04
Identities = 35/140 (25%), Positives = 71/140 (50%), Gaps = 10/140 (7%)
Frame = +3
Query: 51 EIMEMRSTFDAQVKEHANNTSRLQEQ---LCERDQTILELERRMEEKDRELHTIKLDNEA 221
E+ E + Q +E L+EQ L E++Q + E E+ +EE+++EL + + E
Sbjct: 706 ELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEEQEQELEE 765
Query: 222 AWAKQDLLREQSKELATFRRERDHAEAERAQHIKQIHDL-------QEHIQEKDRQLIEL 380
++ L EQ +EL +E++ E E + ++ +L QE ++++++L E+
Sbjct: 766 ---QEQELEEQEQELEEQEQEQELEEVEEQEQEQEEQELEEVEEQEQEQEEQEEQELEEV 822
Query: 381 QDQNRVAQETIMIKDEQVRE 440
++Q E + ++EQ E
Sbjct: 823 EEQEEQELEEVEEQEEQELE 842
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,837,189
Number of Sequences: 1393205
Number of extensions: 7950240
Number of successful extensions: 34709
Number of sequences better than 10.0: 2306
Number of HSP's better than 10.0 without gapping: 28947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33593
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
