Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004605A_C01 KMC004605A_c01
(567 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178250.1| hypothetical protein; protein id: At2g01410.1 [... 144 1e-33
dbj|BAC41852.1| unknown protein [Arabidopsis thaliana] 143 2e-33
dbj|BAB92468.1| P0704D04.8 [Oryza sativa (japonica cultivar-group)] 69 4e-11
prf||2119210A mucin 43 0.002
ref|NP_683012.1| serine/threonine protein kinase [Thermosynechoc... 43 0.003
>ref|NP_178250.1| hypothetical protein; protein id: At2g01410.1 [Arabidopsis
thaliana] gi|25410903|pir||D84424 hypothetical protein
At2g01410 [imported] - Arabidopsis thaliana
gi|3785971|gb|AAC67318.1| hypothetical protein
[Arabidopsis thaliana] gi|20197583|gb|AAM15141.1|
hypothetical protein [Arabidopsis thaliana]
Length = 387
Score = 144 bits (362), Expect = 1e-33
Identities = 77/133 (57%), Positives = 92/133 (68%), Gaps = 6/133 (4%)
Frame = -2
Query: 560 ADGVAVRR-DGVVLVVSPEVNKLWFLKSNDGWGVGVVSDQIDLDEEGFPTTVVSRERDRS 384
ADG+ RR DG V+VVS + KLW LKS D W GVV D+IDLD EGFPT V RDR
Sbjct: 257 ADGMTRRRRDGTVMVVSQK--KLWLLKSQDSWSEGVVYDEIDLDIEGFPTAVTVAGRDR- 313
Query: 383 TYVLYGNFIEGVSGNS-----VREGFRIEEVRSPKEGEGENVWMYVMIGFGLAYFLYWRF 219
YVLYG +EG+ G+S RE F IEEV S KEG + +W+YV+IGFG AYF +WRF
Sbjct: 314 IYVLYGRVMEGIMGSSYKEEGAREWFGIEEVWSEKEGGEDKIWLYVLIGFGFAYFCFWRF 373
Query: 218 QMGQLVKNMDKKV 180
QM +L+ NMDKK+
Sbjct: 374 QMKKLITNMDKKI 386
>dbj|BAC41852.1| unknown protein [Arabidopsis thaliana]
Length = 128
Score = 143 bits (360), Expect = 2e-33
Identities = 74/126 (58%), Positives = 88/126 (69%), Gaps = 5/126 (3%)
Frame = -2
Query: 542 RRDGVVLVVSPEVNKLWFLKSNDGWGVGVVSDQIDLDEEGFPTTVVSRERDRSTYVLYGN 363
RRDG V+VVS + KLW LKS D W GVV D+IDLD EGFPT V RDR YVLYG
Sbjct: 5 RRDGTVMVVSQK--KLWLLKSQDSWSEGVVYDEIDLDIEGFPTAVTVAGRDR-IYVLYGR 61
Query: 362 FIEGVSGNS-----VREGFRIEEVRSPKEGEGENVWMYVMIGFGLAYFLYWRFQMGQLVK 198
+EG+ G+S RE F IEEV S KEG + +W+YV+IGFG AYF +WRFQM +L+
Sbjct: 62 VMEGIMGSSYKEEGAREWFGIEEVWSEKEGGEDKIWLYVLIGFGFAYFCFWRFQMKKLIT 121
Query: 197 NMDKKV 180
NMDKK+
Sbjct: 122 NMDKKI 127
>dbj|BAB92468.1| P0704D04.8 [Oryza sativa (japonica cultivar-group)]
Length = 332
Score = 68.9 bits (167), Expect = 4e-11
Identities = 49/126 (38%), Positives = 63/126 (49%), Gaps = 2/126 (1%)
Frame = -2
Query: 551 VAVRRDGVVLVVSPEVNKLWFLKSNDGWGVGVVSDQIDLD--EEGFPTTVVSRERDRSTY 378
VAVR DG V V +L + SNDGW D+ + D V RER R Y
Sbjct: 214 VAVRSDGTVAVGGGATLRL--VGSNDGWSSCAERDEAEPDGGAAAAVAAVAVRER-RRVY 270
Query: 377 VLYGNFIEGVSGNSVREGFRIEEVRSPKEGEGENVWMYVMIGFGLAYFLYWRFQMGQLVK 198
L + +RIEEV KEGEGE V +V +G LA F++WRFQM +L
Sbjct: 271 ALVA-----AADAEKAAAWRIEEVSWKKEGEGEMVVGFVFVGVALAIFMFWRFQMRELAG 325
Query: 197 NMDKKV 180
+M+KK+
Sbjct: 326 SMNKKI 331
>prf||2119210A mucin
Length = 164
Score = 43.1 bits (100), Expect = 0.002
Identities = 34/106 (32%), Positives = 49/106 (46%)
Frame = +1
Query: 247 PNPIITYIQTFSPSPSLGDLTSSILNPSLTEFPETPSMKFPYNT*VDLSLSRETTVVGNP 426
P+P+ T T +P+ S T+S S T P T + P T L+ + TT
Sbjct: 39 PSPVPTTSTTSAPTTS----TTSAPTTSTTSAPTTSTPSAP-TTSTTLAPTTSTTSAPTT 93
Query: 427 SSSRSIWSDTTPTPHPSLLFRNHSLFTSGDTTKTTPSRLTATPSAP 564
S++ + S TT TP S + + TSG T +P T+T SAP
Sbjct: 94 STTSTPTSSTTSTPQTSTTSASTTSITSGPGTTPSPVPTTSTTSAP 139
Score = 32.3 bits (72), Expect = 4.2
Identities = 27/74 (36%), Positives = 37/74 (49%), Gaps = 2/74 (2%)
Frame = +1
Query: 349 TPSMKFPYNT*VDLSLSRETTVVGNPSSSRSIWSDTTPTPHP--SLLFRNHSLFTSGDTT 522
TPS P T +S+ +T + +S+ S TTP+P P S + TS TT
Sbjct: 6 TPS---PVPTTSSISVPTTSTTSASTTSTTS-GPGTTPSPVPTTSTTSAPTTSTTSAPTT 61
Query: 523 KTTPSRLTATPSAP 564
TT + T+TPSAP
Sbjct: 62 STTSAPTTSTPSAP 75
>ref|NP_683012.1| serine/threonine protein kinase [Thermosynechococcus elongatus
BP-1] gi|22295949|dbj|BAC09774.1| serine/threonine
protein kinase [Thermosynechococcus elongatus BP-1]
Length = 488
Score = 42.7 bits (99), Expect = 0.003
Identities = 35/114 (30%), Positives = 47/114 (40%), Gaps = 2/114 (1%)
Frame = +2
Query: 212 PSETSNTRNKPTQIQSSHTSKHSHPLP-PWETSPPQS*TPPSLNFPKHPQ*SSHTTRKLT 388
P T N +PT S +++ + P P P E SPPQ PPS + P + S +
Sbjct: 377 PEPTPNPAPEPTP--SPESTEPATPSPAPQEASPPQPTPPPSSSEPSNATPSPEPGVSQS 434
Query: 389 YPSPAKQQ**ETLPRQGQFGQTPHPPPTHHCSSE-TTACSLPATPPKRRRLASP 547
P PA + P +TP PP +SE T P PP A+P
Sbjct: 435 SPPPAPVESPVPTPPPSPAAETPPPPTNSQPTSEPPTPPPQPTPPPSSSEPATP 488
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 540,902,593
Number of Sequences: 1393205
Number of extensions: 13510845
Number of successful extensions: 56488
Number of sequences better than 10.0: 289
Number of HSP's better than 10.0 without gapping: 47841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54552
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
