Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004601A_C01 KMC004601A_c01
(848 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174304.1| pyruvate dehydrogenase E1 beta subunit, putativ... 267 2e-70
gb|AAB86804.1| pyruvate dehydrogenase E1 beta subunit [Arabidops... 266 2e-70
ref|NP_181006.1| putative pyruvate dehydrogenase E1 beta subunit... 265 5e-70
gb|AAM65328.1| putative pyruvate dehydrogenase E1 beta subunit [... 265 5e-70
gb|AAC32149.1| pyruvate dehydrogenase E1 beta subunit [Picea mar... 251 1e-65
>ref|NP_174304.1| pyruvate dehydrogenase E1 beta subunit, putative; protein id:
At1g30120.1, supported by cDNA: 38062., supported by
cDNA: gi_13605514, supported by cDNA: gi_20334775,
supported by cDNA: gi_2454183 [Arabidopsis thaliana]
gi|25284456|pir||C86425 probable pyruvate dehydrogenase
E1 beta subunit - Arabidopsis thaliana
gi|12321636|gb|AAG50862.1|AC074176_11 pyruvate
dehydrogenase E1 beta subunit, putative [Arabidopsis
thaliana] gi|13605515|gb|AAK32751.1|AF361583_1
At1g30120/T2H7_8 [Arabidopsis thaliana]
gi|20334776|gb|AAM16249.1| At1g30120/T2H7_8 [Arabidopsis
thaliana]
Length = 406
Score = 267 bits (682), Expect = 2e-70
Identities = 130/140 (92%), Positives = 137/140 (97%)
Frame = -1
Query: 848 PDEEYVLSLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL 669
PDE+YV +LEEAEMVRPGEH+TILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL
Sbjct: 266 PDEDYVCNLEEAEMVRPGEHITILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL 325
Query: 668 HTIGNSVKKTHRVLIVEECMRTGGIGASLTAAISENFNDYLDAPIVCLSSQDVPTPYAGP 489
HTIGNSVKKTHRVLIVEECMRTGGIGASLTAAI+ENF+DYLDAP++CLSSQDVPTPYAG
Sbjct: 326 HTIGNSVKKTHRVLIVEECMRTGGIGASLTAAINENFHDYLDAPVMCLSSQDVPTPYAGT 385
Query: 488 LEEMTVVQPAQIVTAVEQLC 429
LEE TVVQPAQIVTAVEQLC
Sbjct: 386 LEEWTVVQPAQIVTAVEQLC 405
>gb|AAB86804.1| pyruvate dehydrogenase E1 beta subunit [Arabidopsis thaliana]
gi|21593321|gb|AAM65270.1| pyruvate dehydrogenase E1
beta subunit, putative [Arabidopsis thaliana]
Length = 406
Score = 266 bits (681), Expect = 2e-70
Identities = 129/140 (92%), Positives = 137/140 (97%)
Frame = -1
Query: 848 PDEEYVLSLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL 669
PDE+Y+ +LEEAEMVRPGEH+TILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL
Sbjct: 266 PDEDYICNLEEAEMVRPGEHITILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL 325
Query: 668 HTIGNSVKKTHRVLIVEECMRTGGIGASLTAAISENFNDYLDAPIVCLSSQDVPTPYAGP 489
HTIGNSVKKTHRVLIVEECMRTGGIGASLTAAI+ENF+DYLDAP++CLSSQDVPTPYAG
Sbjct: 326 HTIGNSVKKTHRVLIVEECMRTGGIGASLTAAINENFHDYLDAPVMCLSSQDVPTPYAGT 385
Query: 488 LEEMTVVQPAQIVTAVEQLC 429
LEE TVVQPAQIVTAVEQLC
Sbjct: 386 LEEWTVVQPAQIVTAVEQLC 405
>ref|NP_181006.1| putative pyruvate dehydrogenase E1 beta subunit; protein id:
At2g34590.1, supported by cDNA: 38439., supported by
cDNA: gi_5702374 [Arabidopsis thaliana]
gi|25284457|pir||E84758 probable pyruvate dehydrogenase
E1 beta subunit [imported] - Arabidopsis thaliana
gi|3128205|gb|AAC26685.1| putative pyruvate
dehydrogenase E1 beta subunit [Arabidopsis thaliana]
gi|5702375|gb|AAD47282.1|AF167983_1 putative pyruvate
dehydrogenase beta subunit [Arabidopsis thaliana]
Length = 406
Score = 265 bits (678), Expect = 5e-70
Identities = 129/140 (92%), Positives = 137/140 (97%)
Frame = -1
Query: 848 PDEEYVLSLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL 669
PDEEY+ +LEEAEMVRPGEH+TILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL
Sbjct: 266 PDEEYICNLEEAEMVRPGEHITILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL 325
Query: 668 HTIGNSVKKTHRVLIVEECMRTGGIGASLTAAISENFNDYLDAPIVCLSSQDVPTPYAGP 489
+TIGNSVKKTHRVLIVEECMRTGGIGASLTAAI+ENF+DYLDAP++CLSSQDVPTPYAG
Sbjct: 326 YTIGNSVKKTHRVLIVEECMRTGGIGASLTAAINENFHDYLDAPVMCLSSQDVPTPYAGT 385
Query: 488 LEEMTVVQPAQIVTAVEQLC 429
LEE TVVQPAQIVTAVEQLC
Sbjct: 386 LEEWTVVQPAQIVTAVEQLC 405
>gb|AAM65328.1| putative pyruvate dehydrogenase E1 beta subunit [Arabidopsis
thaliana]
Length = 406
Score = 265 bits (678), Expect = 5e-70
Identities = 129/140 (92%), Positives = 137/140 (97%)
Frame = -1
Query: 848 PDEEYVLSLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL 669
PDEEY+ +LEEAEMVRPGEH+TILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL
Sbjct: 266 PDEEYICNLEEAEMVRPGEHITILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL 325
Query: 668 HTIGNSVKKTHRVLIVEECMRTGGIGASLTAAISENFNDYLDAPIVCLSSQDVPTPYAGP 489
+TIGNSVKKTHRVLIVEECMRTGGIGASLTAAI+ENF+DYLDAP++CLSSQDVPTPYAG
Sbjct: 326 YTIGNSVKKTHRVLIVEECMRTGGIGASLTAAINENFHDYLDAPVMCLSSQDVPTPYAGT 385
Query: 488 LEEMTVVQPAQIVTAVEQLC 429
LEE TVVQPAQIVTAVEQLC
Sbjct: 386 LEEWTVVQPAQIVTAVEQLC 405
>gb|AAC32149.1| pyruvate dehydrogenase E1 beta subunit [Picea mariana]
Length = 287
Score = 251 bits (640), Expect = 1e-65
Identities = 124/140 (88%), Positives = 130/140 (92%)
Frame = -1
Query: 848 PDEEYVLSLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL 669
PDEEYV LEEAEMVRPG VTILTYSRMRYHVMQAAKTLVNKGYDPE+IDIRSLKPFDL
Sbjct: 147 PDEEYVCCLEEAEMVRPGADVTILTYSRMRYHVMQAAKTLVNKGYDPEIIDIRSLKPFDL 206
Query: 668 HTIGNSVKKTHRVLIVEECMRTGGIGASLTAAISENFNDYLDAPIVCLSSQDVPTPYAGP 489
HTIGNS+KKTHRVLIVEECMRTGGIGASL AAI ENF DYLDAPI+CLSSQDVPTPYAG
Sbjct: 207 HTIGNSIKKTHRVLIVEECMRTGGIGASLRAAIIENFWDYLDAPIMCLSSQDVPTPYAGT 266
Query: 488 LEEMTVVQPAQIVTAVEQLC 429
LE+ TVVQP QIV+AVEQ+C
Sbjct: 267 LEDWTVVQPPQIVSAVEQIC 286
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 690,501,977
Number of Sequences: 1393205
Number of extensions: 14226204
Number of successful extensions: 29538
Number of sequences better than 10.0: 421
Number of HSP's better than 10.0 without gapping: 28371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29422
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44594917920
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
