Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004594A_C01 KMC004594A_c01
(451 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188695.2| non-race specific disease resistance protein, p... 41 0.004
ref|NP_188696.1| non-race specific disease resistance protein (N... 40 0.005
ref|NP_177881.1| hypothetical protein; protein id: At1g77580.1 [... 36 0.093
pir||T03816 hypothetical protein (clone NG2) - common tobacco gi... 36 0.12
sp|Q62635|MUC2_RAT Mucin 2 precursor (Intestinal mucin 2) gi|108... 35 0.16
>ref|NP_188695.2| non-race specific disease resistance protein, putative; protein id:
At3g20590.1 [Arabidopsis thaliana]
gi|11994146|dbj|BAB01167.1| non-race specific disease
resistance protein-like [Arabidopsis thaliana]
Length = 255
Score = 40.8 bits (94), Expect = 0.004
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = -3
Query: 437 DGKMYFRVEFDTAVKYKISLWYTKKRDLLWGGANVEIGDSGVKVHRKAIRLGDS 276
+G FR++ T V++KI W TK + GA+VE+ GVK + K I++ S
Sbjct: 142 NGSAVFRLDLKTHVRFKIVFWKTKWYRRIKVGADVEVNGDGVKANEKEIKMEKS 195
>ref|NP_188696.1| non-race specific disease resistance protein (NDR1); protein id:
At3g20600.1 [Arabidopsis thaliana]
gi|2754816|gb|AAB95208.1| non-race specific disease
resistance protein [Arabidopsis thaliana]
gi|11994147|dbj|BAB01168.1| non-race specific disease
resistance protein [Arabidopsis thaliana]
gi|25082922|gb|AAN72015.1| non-race specific disease
resistance protein (NDR1) [Arabidopsis thaliana]
Length = 219
Score = 40.4 bits (93), Expect = 0.005
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = -3
Query: 437 DGKMYFRVEFDTAVKYKISLWYTKKRDLLWGGANVEIGDSGVKVHRKAIRLGDSQA 270
+G FR++ T V++KI W TK+ + GA+VE+ GVK +K I++ S +
Sbjct: 142 NGSAVFRLDLKTQVRFKIVFWKTKRYG-VEVGADVEVNGDGVKAQKKGIKMKKSDS 196
>ref|NP_177881.1| hypothetical protein; protein id: At1g77580.1 [Arabidopsis
thaliana] gi|25406513|pir||C96805 hypothetical protein
T5M16.17 [imported] - Arabidopsis thaliana
gi|12323385|gb|AAG51666.1|AC010704_10 hypothetical
protein; 57314-54712 [Arabidopsis thaliana]
Length = 779
Score = 36.2 bits (82), Expect = 0.093
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = +2
Query: 317 RNHQFPHLPLPTTSPSSSCTTARSCTSPPYQTPRGSTSSRR 439
RNH P TSPSSS +TA + S P T RGS+ R
Sbjct: 721 RNHPESIKPTKETSPSSSSSTASAAVSMPVSTNRGSSEKNR 761
>pir||T03816 hypothetical protein (clone NG2) - common tobacco
gi|1762951|gb|AAC49978.1| ORF; able to induce HR-like
lesions [Nicotiana tabacum]
Length = 60
Score = 35.8 bits (81), Expect = 0.12
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -3
Query: 431 KMYFRVEFDTAVKYKISLWYTKKRDLLWGGANVEIGDSG 315
K+ FRV+ T V+YK+ LWYTK+ + +++ SG
Sbjct: 7 KVVFRVDVATRVRYKVILWYTKRHNYTLENNTLKVDASG 45
>sp|Q62635|MUC2_RAT Mucin 2 precursor (Intestinal mucin 2) gi|1083720|pir||A54895 mucin
2, intestinal/tracheal - rat (fragment)
gi|12831482|gb|AAA21655.2| mucin [Rattus norvegicus]
Length = 1513
Score = 35.4 bits (80), Expect = 0.16
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 347 PTTSPSSSCTTARSCTSPPYQTPRGSTSSRRPSP 448
PTTSP++S T+ + T+ P +P ST+S PSP
Sbjct: 1447 PTTSPTTSTTSPTTSTTSPTPSPTTSTTSPTPSP 1480
Score = 30.0 bits (66), Expect = 6.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 347 PTTSPSSSCTTARSCTSPPYQTPRGSTSSRRPSP 448
PTTSP++S T+ + + +P ST+S PSP
Sbjct: 1436 PTTSPTTSTTSPTTSPTTSTTSPTTSTTSPTPSP 1469
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,556,096
Number of Sequences: 1393205
Number of extensions: 8750440
Number of successful extensions: 36390
Number of sequences better than 10.0: 96
Number of HSP's better than 10.0 without gapping: 33102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36194
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
