Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004586A_C01 KMC004586A_c01
(686 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177673.1| hypothetical protein; protein id: At1g75400.1 [... 159 3e-38
pir||E96784 hypothetical protein F1B16.7 [imported] - Arabidopsi... 159 3e-38
gb|AAM61613.1| unknown [Arabidopsis thaliana] 134 2e-30
ref|NP_195625.1| putative protein; protein id: At4g39140.1, supp... 134 2e-30
pir||A84602 hypothetical protein At2g21500 [imported] - Arabidop... 132 6e-30
>ref|NP_177673.1| hypothetical protein; protein id: At1g75400.1 [Arabidopsis
thaliana] gi|22136048|gb|AAM91606.1| unknown protein
[Arabidopsis thaliana] gi|23197740|gb|AAN15397.1|
unknown protein [Arabidopsis thaliana]
gi|26450462|dbj|BAC42345.1| unknown protein [Arabidopsis
thaliana]
Length = 455
Score = 159 bits (402), Expect = 3e-38
Identities = 79/148 (53%), Positives = 107/148 (71%), Gaps = 3/148 (2%)
Frame = -3
Query: 681 VANNDLSVVAVLDCGHAYHAECLETMTTEVDRYDPACPICMVGDKHLSKMFRKGLRAESE 502
+A +L + AVL CGH YHAECLETMTT++++YDPACPIC +G+K ++K+ RK L+AE+E
Sbjct: 294 IATFELPIAAVLACGHVYHAECLETMTTDIEKYDPACPICTIGEKRVAKITRKALKAEAE 353
Query: 501 IKAKNHKISKNRVIDSYLDGGFD--VFDRQKEWGGKIPKMEPSSSARSSNGKPFLRRHF- 331
KAK +K KNRV+DSY + D VF + + GK K+E S S++SS+ K FL+ HF
Sbjct: 354 AKAKQYKRCKNRVVDSYGESECDEFVFQKMGKREGKALKLEASCSSKSSSNKSFLKWHFA 413
Query: 330 SIGSKWRRSMSENDSARKKGFWARYRKD 247
SI SKW + S DSA KKGFW+R+R +
Sbjct: 414 SISSKWNKP-SSKDSALKKGFWSRHRNN 440
>pir||E96784 hypothetical protein F1B16.7 [imported] - Arabidopsis thaliana
gi|10120442|gb|AAG13067.1|AC023754_5 hypothetical
protein [Arabidopsis thaliana]
Length = 435
Score = 159 bits (402), Expect = 3e-38
Identities = 79/148 (53%), Positives = 107/148 (71%), Gaps = 3/148 (2%)
Frame = -3
Query: 681 VANNDLSVVAVLDCGHAYHAECLETMTTEVDRYDPACPICMVGDKHLSKMFRKGLRAESE 502
+A +L + AVL CGH YHAECLETMTT++++YDPACPIC +G+K ++K+ RK L+AE+E
Sbjct: 272 IATFELPIAAVLACGHVYHAECLETMTTDIEKYDPACPICTIGEKRVAKITRKALKAEAE 331
Query: 501 IKAKNHKISKNRVIDSYLDGGFD--VFDRQKEWGGKIPKMEPSSSARSSNGKPFLRRHF- 331
KAK +K KNRV+DSY + D VF + + GK K+E S S++SS+ K FL+ HF
Sbjct: 332 AKAKQYKRCKNRVVDSYGESECDEFVFQKMGKREGKALKLEASCSSKSSSNKSFLKWHFA 391
Query: 330 SIGSKWRRSMSENDSARKKGFWARYRKD 247
SI SKW + S DSA KKGFW+R+R +
Sbjct: 392 SISSKWNKP-SSKDSALKKGFWSRHRNN 418
>gb|AAM61613.1| unknown [Arabidopsis thaliana]
Length = 417
Score = 134 bits (336), Expect = 2e-30
Identities = 70/147 (47%), Positives = 97/147 (65%), Gaps = 6/147 (4%)
Frame = -3
Query: 672 NDLSVVAVLDCGHAYHAECLETMTTEVDRYDPACPICMVGDKHLSKMFRKGLRAESEIKA 493
N+LSV A+L CGH YH ECLE MT E+D++DP+CPIC +G+K +K+ K L+ E ++KA
Sbjct: 270 NELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPICTMGEKKTAKLSEKALKVEMDLKA 329
Query: 492 KNHKISKNRVIDSYLD-GGFDVFD---RQKEWGGKIPKMEPSSSARSSNGKPFLRRHFSI 325
+++K +NRV+DS D F +FD R K P++ SSSA+S + KPFL RHFS
Sbjct: 330 RHNKRLRNRVLDSDFDCDDFVMFDHSHRTAAAASKSPRLVSSSSAKSYSAKPFLARHFSF 389
Query: 324 GSKWR-RSMSENDSARKKG-FWARYRK 250
GS+ +S EN +KKG FW + K
Sbjct: 390 GSRSNYKSPKENLPVKKKGFFWTKSSK 416
>ref|NP_195625.1| putative protein; protein id: At4g39140.1, supported by cDNA:
125922., supported by cDNA: gi_17065051 [Arabidopsis
thaliana] gi|7487348|pir||T08562 hypothetical protein
T22F8.40 - Arabidopsis thaliana
gi|4914426|emb|CAB43629.1| putative protein [Arabidopsis
thaliana] gi|7270897|emb|CAB80577.1| putative protein
[Arabidopsis thaliana] gi|17065052|gb|AAL32680.1|
putative protein [Arabidopsis thaliana]
gi|22136224|gb|AAM91190.1| putative protein [Arabidopsis
thaliana]
Length = 429
Score = 134 bits (336), Expect = 2e-30
Identities = 70/147 (47%), Positives = 97/147 (65%), Gaps = 6/147 (4%)
Frame = -3
Query: 672 NDLSVVAVLDCGHAYHAECLETMTTEVDRYDPACPICMVGDKHLSKMFRKGLRAESEIKA 493
N+LSV A+L CGH YH ECLE MT E+D++DP+CPIC +G+K +K+ K L+ E ++KA
Sbjct: 282 NELSVSAILACGHVYHGECLEQMTPEIDKFDPSCPICTMGEKKTAKLSEKALKVEMDLKA 341
Query: 492 KNHKISKNRVIDSYLD-GGFDVFD---RQKEWGGKIPKMEPSSSARSSNGKPFLRRHFSI 325
+++K +NRV+DS D F +FD R K P++ SSSA+S + KPFL RHFS
Sbjct: 342 RHNKRLRNRVLDSDFDCDDFVMFDHSHRTAAAASKSPRLVSSSSAKSYSAKPFLARHFSF 401
Query: 324 GSKWR-RSMSENDSARKKG-FWARYRK 250
GS+ +S EN +KKG FW + K
Sbjct: 402 GSRSNYKSPKENLPVKKKGFFWTKSSK 428
>pir||A84602 hypothetical protein At2g21500 [imported] - Arabidopsis thaliana
gi|4567281|gb|AAD23694.1| unknown protein [Arabidopsis
thaliana]
Length = 409
Score = 132 bits (331), Expect = 6e-30
Identities = 72/153 (47%), Positives = 97/153 (63%), Gaps = 10/153 (6%)
Frame = -3
Query: 678 ANNDLSVVAVLDCGHAYHAECLETMTTEVDRYDPACPICMVGDKHLSKMFRKGLRAESEI 499
A N+LSV A+L CGH YH+ECLE MT E+D++DP+CPIC +G+K K+ K L+A+ E+
Sbjct: 259 ATNELSVAAILACGHVYHSECLEQMTPEIDKFDPSCPICTLGEKKTFKLSEKALKADLEM 318
Query: 498 KAKNHKISKNRVIDSYLDGGFDVFDRQKE----WGGKIPKMEPSSSARSSNGKPFLRRHF 331
KA+++K +NRV+DS F F+ E + GK PK+ SSS RS + KPFL RHF
Sbjct: 319 KARHNKRLRNRVVDS---DEFVKFNNNHEAAVGYKGKTPKLISSSSLRSYSPKPFLARHF 375
Query: 330 SIGS-----KWRRSMSENDSARKKG-FWARYRK 250
S GS K + + S RKKG FW + K
Sbjct: 376 SFGSRSNSVKSPKEIHSPSSLRKKGFFWTKSSK 408
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 580,854,735
Number of Sequences: 1393205
Number of extensions: 12058387
Number of successful extensions: 32650
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 31434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32619
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
