Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004576A_C01 KMC004576A_c01
(1209 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566767.1| ribosomal protein, putative; protein id: At3g25... 499 e-140
ref|NP_198790.1| ribosomal protein L5 - like; protein id: At5g39... 498 e-140
gb|AAM64753.1| ribosomal protein, putative [Arabidopsis thaliana] 495 e-139
sp|P49625|RL5_ORYSA 60S RIBOSOMAL PROTEIN L5 486 e-136
dbj|BAC06272.1| putative 60S ribosomal protein L5 [Oryza sativa ... 480 e-134
>ref|NP_566767.1| ribosomal protein, putative; protein id: At3g25520.1, supported by
cDNA: 32753., supported by cDNA: gi_15809787, supported
by cDNA: gi_17473631 [Arabidopsis thaliana]
gi|15809788|gb|AAL06822.1| AT5g39740/MKM21_30
[Arabidopsis thaliana] gi|17473632|gb|AAL38279.1| 60S
ribosomal protein L5 [Arabidopsis thaliana]
gi|20148745|gb|AAM10263.1| 60S ribosomal protein L5
[Arabidopsis thaliana] gi|22530962|gb|AAM96985.1|
putative ribosomal protein [Arabidopsis thaliana]
gi|23198406|gb|AAN15730.1| putative ribosomal protein
[Arabidopsis thaliana] gi|27311643|gb|AAO00787.1|
ribosomal protein, putative [Arabidopsis thaliana]
Length = 301
Score = 499 bits (1285), Expect = e-140
Identities = 238/301 (79%), Positives = 274/301 (90%)
Frame = -2
Query: 1187 MVFIKAQKPRAYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTAKYRFVVRSTNKDI 1008
MVF+K+ K AYFKR+QVKF+RRR+GKTDYRARIRLINQDKNKYNT KYRFVVR TNKDI
Sbjct: 1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 1007 IAQIISSTIAGDIVLAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYE 828
+AQI+S++IAGDIV A+AY+HELP+YGL VGLTNYAAAYCTGLLLARRVLK LEMD+EYE
Sbjct: 61 VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
Query: 827 GNVEATGEDYSVEPAETRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFA 648
GNVEATGED+SVEP ++RRPFRALLDVGLI+TTTGNRVFGALKGALDGGLDIPHSDKRFA
Sbjct: 121 GNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180
Query: 647 GFDKEKKELDAEVHRKYVFGGHVAAYMKTLIEDEPEKYQSHFSEYIKRGIEADGLEELYK 468
GF KE K+LDAE+HR Y++GGHV+ YMK L EDEPEK Q+HFS YIK+G+EA+ +EELYK
Sbjct: 181 GFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYK 240
Query: 467 KVHAAIRADPTSKKSEKPQPKEHKRYNLKKLTYDERKNKLIARLQALNSAADDQEDDEDD 288
KVHAAIRADP KK+ KP PK+HKRYNLKKLTY+ERKNKLI R++ALN A D +D++D+
Sbjct: 241 KVHAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDDEDDE 300
Query: 287 E 285
E
Sbjct: 301 E 301
>ref|NP_198790.1| ribosomal protein L5 - like; protein id: At5g39740.1, supported by
cDNA: gi_19310481, supported by cDNA: gi_20260447
[Arabidopsis thaliana] gi|19884108|sp|P49227|RL5_ARATH
60S ribosomal protein L5 gi|10177974|dbj|BAB11380.1| 60S
ribosomal protein L5 [Arabidopsis thaliana]
gi|19310482|gb|AAL84975.1| AT5g39740/MKM21_30
[Arabidopsis thaliana] gi|20260448|gb|AAM13122.1|
ribosomal protein L5 - like [Arabidopsis thaliana]
Length = 301
Score = 498 bits (1282), Expect = e-140
Identities = 237/301 (78%), Positives = 274/301 (90%)
Frame = -2
Query: 1187 MVFIKAQKPRAYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTAKYRFVVRSTNKDI 1008
MVF+K+ K AYFKR+QVKF+RRR+GKTDYRARIRLINQDKNKYNT KYRFVVR TNKDI
Sbjct: 1 MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 1007 IAQIISSTIAGDIVLAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYE 828
+AQI+S++IAGDIV A+AY+HELP+YGL VGLTNYAAAYCTGLLLARRVLK LEMD+EYE
Sbjct: 61 VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
Query: 827 GNVEATGEDYSVEPAETRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFA 648
GNVEATGED+SVEP ++RRPFRALLDVGLI+TTTGNRVFGALKGALDGGLDIPHSDKRFA
Sbjct: 121 GNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180
Query: 647 GFDKEKKELDAEVHRKYVFGGHVAAYMKTLIEDEPEKYQSHFSEYIKRGIEADGLEELYK 468
GF KE K+LDAE+HR Y++GGHV+ YMK L EDEPEK Q+HFS YIK+G+EA+ +EE+YK
Sbjct: 181 GFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYK 240
Query: 467 KVHAAIRADPTSKKSEKPQPKEHKRYNLKKLTYDERKNKLIARLQALNSAADDQEDDEDD 288
KVHAAIRA+P KK+EK PKEHKRYNLKKLTY+ERKNKLI R++ALN A D +D++D+
Sbjct: 241 KVHAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDDEDDE 300
Query: 287 E 285
E
Sbjct: 301 E 301
>gb|AAM64753.1| ribosomal protein, putative [Arabidopsis thaliana]
Length = 301
Score = 495 bits (1275), Expect = e-139
Identities = 239/301 (79%), Positives = 273/301 (90%)
Frame = -2
Query: 1187 MVFIKAQKPRAYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTAKYRFVVRSTNKDI 1008
MVF+K+ K AYFKR+QVKF+RRR+GKTDYRARIRLINQDKNKYNT KYRFVVR TNKDI
Sbjct: 1 MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
Query: 1007 IAQIISSTIAGDIVLAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYE 828
+AQI+S++IAGDIV A+AY+HELP+YGL VGLTNYAAAYCTGLLLARRVLK LEMD+EYE
Sbjct: 61 VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120
Query: 827 GNVEATGEDYSVEPAETRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFA 648
GNVEATGED+SVEP ++RRPFRALLDVGLI+TTTGNRVFGALKGALDGGLDIPHSDKRFA
Sbjct: 121 GNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180
Query: 647 GFDKEKKELDAEVHRKYVFGGHVAAYMKTLIEDEPEKYQSHFSEYIKRGIEADGLEELYK 468
GF KE K+LDAE+HR Y++GGHV+ YMK L EDEPEK Q+HFS YIK+G+EA+ +EELYK
Sbjct: 181 GFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYK 240
Query: 467 KVHAAIRADPTSKKSEKPQPKEHKRYNLKKLTYDERKNKLIARLQALNSAADDQEDDEDD 288
KVHAAIRA P +K+ KP PK+HKRYNLKKLTY+ERKNKLI R++ALN A D +DDEDD
Sbjct: 241 KVHAAIRAXPNXRKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALNGAGGD-DDDEDD 299
Query: 287 E 285
E
Sbjct: 300 E 300
>sp|P49625|RL5_ORYSA 60S RIBOSOMAL PROTEIN L5
Length = 304
Score = 486 bits (1251), Expect = e-136
Identities = 233/301 (77%), Positives = 270/301 (89%), Gaps = 2/301 (0%)
Frame = -2
Query: 1181 FIKAQKPRAYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTAKYRFVVRSTNKDIIA 1002
F+K QK AY+KRFQVKFKRRR+GKTDYRARIRL NQDKNKYNT KYRFVVR TNKDI A
Sbjct: 4 FVKTQKTNAYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITA 63
Query: 1001 QIISSTIAGDIVLAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGN 822
QI+ +TIAGDIV+AAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLK +D+EYEGN
Sbjct: 64 QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGN 123
Query: 821 VEATGEDYSVEPAETRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 642
+EATGEDY VEPA+ RRPFRALLDVGLI+TTTGNRVFGALKGALDGGLDIPHSDKRFAGF
Sbjct: 124 IEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 183
Query: 641 DKEKKELDAEVHRKYVFGGHVAAYMKTLIEDEPEKYQSHFSEYIKRGIEADGLEELYKKV 462
K++K+LD+++HRKY++GGHVA YM+++ E+EPEK+Q+HFSEY+K+GI+ADG+E LYKKV
Sbjct: 184 KKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKV 243
Query: 461 HAAIRADPTSKKSEKPQPKEHKRYNLKKLTYDERKNKLIARLQALNSA--ADDQEDDEDD 288
HAAIRADP KS K +P HKRYNLKKLTY++RK L+ RL ALNS+ ADD +++EDD
Sbjct: 244 HAAIRADPYHAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEEDD 303
Query: 287 E 285
E
Sbjct: 304 E 304
>dbj|BAC06272.1| putative 60S ribosomal protein L5 [Oryza sativa (japonica
cultivar-group)] gi|22093591|dbj|BAC06887.1| putative 60S
ribosomal protein L5 [Oryza sativa (japonica
cultivar-group)]
Length = 304
Score = 480 bits (1236), Expect = e-134
Identities = 233/301 (77%), Positives = 268/301 (88%), Gaps = 2/301 (0%)
Frame = -2
Query: 1181 FIKAQKPRAYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTAKYRFVVRSTNKDIIA 1002
F+K QK AYFKRFQVKFKRRR+GKTDYRARIRL NQDKNKYNT KYRFV TNKDI A
Sbjct: 7 FVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITA 63
Query: 1001 QIISSTIAGDIVLAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGN 822
QI+ +TIAGDIV+AAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVL +D+EYEGN
Sbjct: 64 QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGN 123
Query: 821 VEATGEDYSVEPAETRRPFRALLDVGLIKTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 642
VEATGEDY VEPA+ RRPFRALLDVGLI+TTTGNRVFGALKGALDGGLDIPHSDKRFAGF
Sbjct: 124 VEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 183
Query: 641 DKEKKELDAEVHRKYVFGGHVAAYMKTLIEDEPEKYQSHFSEYIKRGIEADGLEELYKKV 462
K++K+LD+++HRKY++GGHVA YM+++ E+EPEK+Q+HFSEY+K+GI+ADG+E LYKKV
Sbjct: 184 KKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKV 243
Query: 461 HAAIRADPTSKKSEKPQPKEHKRYNLKKLTYDERKNKLIARLQALNSA--ADDQEDDEDD 288
HAAIRADPT KS K +P HKRYNLKKLTY++RK L+ RL ALNS+ ADD +++EDD
Sbjct: 244 HAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEEDD 303
Query: 287 E 285
E
Sbjct: 304 E 304
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,015,623,939
Number of Sequences: 1393205
Number of extensions: 22892364
Number of successful extensions: 78957
Number of sequences better than 10.0: 175
Number of HSP's better than 10.0 without gapping: 67226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77372
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 75388135092
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
