Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004570A_C01 KMC004570A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_485231.1| putative oxidoreductase [Nostoc sp. PCC 7120] g... 61 2e-10
ref|ZP_00084857.1| hypothetical protein [Pseudomonas fluorescens... 50 5e-10
dbj|BAA89423.1| allyl alcohol dehydrogenase [Nicotiana tabacum] 60 5e-10
ref|NP_420823.1| alcohol dehydrogenase, zinc-containing [Cauloba... 58 1e-09
ref|NP_743971.1| alcohol dehydrogenase, zinc-containing [Pseudom... 51 2e-09
>ref|NP_485231.1| putative oxidoreductase [Nostoc sp. PCC 7120]
gi|25535109|pir||AI1954 hypothetical protein all1188
[imported] - Nostoc sp. (strain PCC 7120)
gi|17130535|dbj|BAB73145.1| ORF_ID:all1188~putative
oxidoreductase [Nostoc sp. PCC 7120]
Length = 356
Score = 60.8 bits (146), Expect(2) = 2e-10
Identities = 34/76 (44%), Positives = 48/76 (62%)
Frame = -2
Query: 535 GEMLEAVLNHVHQYARIPLSGMISQYNKVWTEREGVRNLLNMIGKELRMEGFMLATYWHR 356
GE+LEAVL ++ ARIPL G+ISQYN + NLL ++ K ++GF+++ Y +R
Sbjct: 247 GEILEAVLQQINLGARIPLVGLISQYNA--SSPPPGPNLLPLLIKRALIKGFLVSDYQYR 304
Query: 355 FGDFAQDTGGIHQRGQ 308
F DF +D G Q GQ
Sbjct: 305 FPDFVRDVAGWLQSGQ 320
Score = 25.8 bits (55), Expect(2) = 2e-10
Identities = 12/35 (34%), Positives = 20/35 (56%)
Frame = -1
Query: 308 RLKSKHKINIGIESFLDSLSSLFTSSNIGKVIVQV 204
+LK K + +G+E+ + L N GK+IV+V
Sbjct: 320 QLKYKEDVVVGLENAPRAFIGLLRGDNFGKLIVKV 354
>ref|ZP_00084857.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 357
Score = 49.7 bits (117), Expect(2) = 5e-10
Identities = 27/76 (35%), Positives = 45/76 (58%)
Frame = -2
Query: 535 GEMLEAVLNHVHQYARIPLSGMISQYNKVWTEREGVRNLLNMIGKELRMEGFMLATYWHR 356
G++L+AVL+ ++ AR+ + G ISQYN + G N L+++ RMEGF++ Y +
Sbjct: 249 GDILDAVLSRLNFKARVVICGAISQYNNKEAVK-GPANYLSLLVNRARMEGFVVMDYAAQ 307
Query: 355 FGDFAQDTGGIHQRGQ 308
+ AQ+ G +GQ
Sbjct: 308 YASAAQEMAGWMAKGQ 323
Score = 35.4 bits (80), Expect(2) = 5e-10
Identities = 15/37 (40%), Positives = 26/37 (69%)
Frame = -1
Query: 314 RARLKSKHKINIGIESFLDSLSSLFTSSNIGKVIVQV 204
+ +LKSK I G+E+F ++L LF+ N GK++++V
Sbjct: 321 KGQLKSKEDIVEGLETFPETLGKLFSGENFGKLVLKV 357
>dbj|BAA89423.1| allyl alcohol dehydrogenase [Nicotiana tabacum]
Length = 343
Score = 59.7 bits (143), Expect(2) = 5e-10
Identities = 31/66 (46%), Positives = 44/66 (65%)
Frame = -2
Query: 535 GEMLEAVLNHVHQYARIPLSGMISQYNKVWTEREGVRNLLNMIGKELRMEGFMLATYWHR 356
G+ML+AVL ++ Y RI + GMISQYN T EGV NL +I K +RMEGF++ Y+H
Sbjct: 233 GKMLDAVLVNMKLYGRIAVCGMISQYNLEQT--EGVHNLFCLITKRIRMEGFLVFDYYHL 290
Query: 355 FGDFAQ 338
+ + +
Sbjct: 291 YPKYLE 296
Score = 25.4 bits (54), Expect(2) = 5e-10
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 278 GIESFLDSLSSLFTSSNIGKVIVQV 204
G+ES +L LF+ NIGK +V V
Sbjct: 316 GLESAPTALVGLFSGRNIGKQVVMV 340
>ref|NP_420823.1| alcohol dehydrogenase, zinc-containing [Caulobacter crescentus
CB15] gi|25398369|pir||C87499 alcohol dehydrogenase,
zinc-containing [imported] - Caulobacter crescentus
gi|13423489|gb|AAK23991.1| alcohol dehydrogenase,
zinc-containing [Caulobacter crescentus CB15]
Length = 341
Score = 57.8 bits (138), Expect(2) = 1e-09
Identities = 28/67 (41%), Positives = 44/67 (64%)
Frame = -2
Query: 535 GEMLEAVLNHVHQYARIPLSGMISQYNKVWTEREGVRNLLNMIGKELRMEGFMLATYWHR 356
G LEA +N +AR L GMISQYN+ ++ EG N++ +GK LR+EGF+++ ++
Sbjct: 232 GVHLEAAINSARPFARFALCGMISQYNET-SKPEGPSNIILAVGKSLRLEGFIVSNHFDL 290
Query: 355 FGDFAQD 335
+ FA+D
Sbjct: 291 YPQFAKD 297
Score = 26.2 bits (56), Expect(2) = 1e-09
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = -1
Query: 317 KRARLKSKHKINIGIESFLDSLSSLFTSSNIGKVIVQV 204
K ++ K + G++ ++ LFT N+GK++V++
Sbjct: 303 KAGKITWKETVEDGVDRAPNAFLKLFTGENLGKMLVKL 340
>ref|NP_743971.1| alcohol dehydrogenase, zinc-containing [Pseudomonas putida KT2440]
gi|24983317|gb|AAN67435.1|AE016371_1 alcohol
dehydrogenase, zinc-containing [Pseudomonas putida
KT2440]
Length = 333
Score = 50.8 bits (120), Expect(2) = 2e-09
Identities = 29/76 (38%), Positives = 43/76 (56%)
Frame = -2
Query: 535 GEMLEAVLNHVHQYARIPLSGMISQYNKVWTEREGVRNLLNMIGKELRMEGFMLATYWHR 356
G++L+AVL ++ ARI + G ISQYN + G N L+++ RMEGF++ Y
Sbjct: 225 GDILDAVLTRINFKARIVICGAISQYNNKEAVK-GPANYLSLLVNRARMEGFVVMDYTKD 283
Query: 355 FGDFAQDTGGIHQRGQ 308
+G AQ+ G GQ
Sbjct: 284 YGKAAQEIAGWLANGQ 299
Score = 32.3 bits (72), Expect(2) = 2e-09
Identities = 13/35 (37%), Positives = 25/35 (71%)
Frame = -1
Query: 308 RLKSKHKINIGIESFLDSLSSLFTSSNIGKVIVQV 204
++KSK + G+E+F ++L LF+ N GK++++V
Sbjct: 299 QVKSKEDVVEGLETFPETLLKLFSGENFGKLVLKV 333
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,807,528
Number of Sequences: 1393205
Number of extensions: 8648225
Number of successful extensions: 24166
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 23591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24123
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
