Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004562A_C01 KMC004562A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191155.1| putative protein; protein id: At3g55960.1, supp... 128 5e-29
dbj|BAB92919.1| P0460C04.11 [Oryza sativa (japonica cultivar-gro... 117 6e-26
ref|NP_196747.1| putative protein; protein id: At5g11860.1, supp... 44 0.001
dbj|BAC57274.1| OJ1559_F09.7 [Oryza sativa (japonica cultivar-gr... 42 0.006
dbj|BAB63547.1| P0003E08.14 [Oryza sativa (japonica cultivar-gro... 40 0.013
>ref|NP_191155.1| putative protein; protein id: At3g55960.1, supported by cDNA:
12627., supported by cDNA: gi_20466679 [Arabidopsis
thaliana] gi|11357691|pir||T49208 hypothetical protein
F27K19.140 - Arabidopsis thaliana
gi|7573491|emb|CAB87850.1| putative protein [Arabidopsis
thaliana] gi|20466680|gb|AAM20657.1| putative protein
[Arabidopsis thaliana] gi|21537285|gb|AAM61626.1|
unknown [Arabidopsis thaliana]
gi|23198192|gb|AAN15623.1| putative protein [Arabidopsis
thaliana]
Length = 305
Score = 128 bits (321), Expect = 5e-29
Identities = 58/74 (78%), Positives = 66/74 (88%)
Frame = -1
Query: 525 VIVDNNPFSFVLQPVNGIPCIPFSAGHPHDTQLLDVILPLLKQLSEQNDVRPLLYEKFHM 346
VIVDNNPFSF+LQP NGIPCI FSAG P+DTQLLDVILPLLKQLSE++DVRP LY++F M
Sbjct: 230 VIVDNNPFSFLLQPSNGIPCIAFSAGQPNDTQLLDVILPLLKQLSEEDDVRPTLYDRFRM 289
Query: 345 TDWFQKQGIPASSW 304
+WF+KQGIP S W
Sbjct: 290 PEWFEKQGIPPSCW 303
>dbj|BAB92919.1| P0460C04.11 [Oryza sativa (japonica cultivar-group)]
Length = 319
Score = 117 bits (294), Expect = 6e-26
Identities = 52/70 (74%), Positives = 60/70 (85%)
Frame = -1
Query: 525 VIVDNNPFSFVLQPVNGIPCIPFSAGHPHDTQLLDVILPLLKQLSEQNDVRPLLYEKFHM 346
VIVDNNPFSF+LQP+NGIPC+PFSAG +D QL++VI PLLK LS Q DVRP LYE+FHM
Sbjct: 244 VIVDNNPFSFILQPLNGIPCVPFSAGQHNDNQLMEVIFPLLKHLSIQRDVRPALYERFHM 303
Query: 345 TDWFQKQGIP 316
+WFQK GIP
Sbjct: 304 PEWFQKHGIP 313
>ref|NP_196747.1| putative protein; protein id: At5g11860.1, supported by cDNA:
151766. [Arabidopsis thaliana] gi|11282308|pir||T48545
hypothetical protein F14F18.30 - Arabidopsis thaliana
gi|7573353|emb|CAB87659.1| putative protein [Arabidopsis
thaliana] gi|21553575|gb|AAM62668.1| unknown
[Arabidopsis thaliana]
Length = 305
Score = 43.9 bits (102), Expect = 0.001
Identities = 25/62 (40%), Positives = 38/62 (60%)
Frame = -1
Query: 525 VIVDNNPFSFVLQPVNGIPCIPFSAGHPHDTQLLDVILPLLKQLSEQNDVRPLLYEKFHM 346
+IVDN+P +F Q NG+P I P D +LL +LP L+ L DVRP++ +KF++
Sbjct: 225 IIVDNSPQAFGFQVENGVP-IESWFNDPSDKELLH-LLPFLESLIGVEDVRPMIAKKFNL 282
Query: 345 TD 340
+
Sbjct: 283 RE 284
>dbj|BAC57274.1| OJ1559_F09.7 [Oryza sativa (japonica cultivar-group)]
Length = 462
Score = 41.6 bits (96), Expect = 0.006
Identities = 26/62 (41%), Positives = 37/62 (58%)
Frame = -1
Query: 525 VIVDNNPFSFVLQPVNGIPCIPFSAGHPHDTQLLDVILPLLKQLSEQNDVRPLLYEKFHM 346
+IVDN+P +F Q NGIP I P+D +LL +LP L+ L DVRP + KF++
Sbjct: 389 MIVDNSPQAFGFQLDNGIP-IESWFDDPNDQELLK-LLPFLESLVGVEDVRPYIARKFNL 446
Query: 345 TD 340
+
Sbjct: 447 RE 448
>dbj|BAB63547.1| P0003E08.14 [Oryza sativa (japonica cultivar-group)]
Length = 543
Score = 40.4 bits (93), Expect = 0.013
Identities = 22/58 (37%), Positives = 34/58 (57%)
Frame = -1
Query: 525 VIVDNNPFSFVLQPVNGIPCIPFSAGHPHDTQLLDVILPLLKQLSEQNDVRPLLYEKF 352
VI+DN P F LQ NGIP + + + L ++P L+ L+ +DVRP++ +KF
Sbjct: 477 VIIDNTPQVFQLQVNNGIPIESWFSDDSDEA--LPQLIPFLETLASADDVRPIIAKKF 532
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,214,403
Number of Sequences: 1393205
Number of extensions: 8973028
Number of successful extensions: 23293
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 22537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23261
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
