Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004558A_C01 KMC004558A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL38271.1| unknown protein [Arabidopsis thaliana] gi|2213612... 139 4e-32
ref|NP_567816.1| Expressed protein; protein id: At4g28706.1, sup... 139 4e-32
ref|NP_199204.1| putative protein; protein id: At5g43910.1 [Arab... 74 1e-12
gb|AAK27804.1|AC022457_7 hypothetical protein [Oryza sativa (jap... 68 8e-11
ref|NP_458027.1| putative sugar kinase [Salmonella enterica subs... 52 4e-06
>gb|AAL38271.1| unknown protein [Arabidopsis thaliana] gi|22136124|gb|AAM91140.1|
unknown protein [Arabidopsis thaliana]
Length = 404
Score = 139 bits (349), Expect = 4e-32
Identities = 63/100 (63%), Positives = 78/100 (78%)
Frame = -1
Query: 599 STSIPACISSPVAKFKSEGIGTVCGKLYVGTAESIPSSELIDTTGAGDAFIGAVIYAICS 420
+T+ P C+SS K K+ G+GT+ G+L++GTAE IP EL+DTTGAGDAFIGAV+YAIC+
Sbjct: 304 TTTFPTCVSSETTKLKANGVGTMTGRLFLGTAEKIPPEELVDTTGAGDAFIGAVLYAICA 363
Query: 419 KFSPETMLSFAANVAGAKCRDLGARSGLPYRTDPRLASFI 300
PE ML FAA VAG CR LGAR+GLP+RTDPRL F+
Sbjct: 364 GMPPEKMLPFAAQVAGCSCRALGARTGLPHRTDPRLVPFL 403
>ref|NP_567816.1| Expressed protein; protein id: At4g28706.1, supported by cDNA:
gi_16226360 [Arabidopsis thaliana]
gi|16226361|gb|AAL16146.1|AF428378_1 unknown protein
[Arabidopsis thaliana] gi|21928053|gb|AAM78055.1|
At4g29227 [Arabidopsis thaliana]
Length = 401
Score = 139 bits (349), Expect = 4e-32
Identities = 63/100 (63%), Positives = 78/100 (78%)
Frame = -1
Query: 599 STSIPACISSPVAKFKSEGIGTVCGKLYVGTAESIPSSELIDTTGAGDAFIGAVIYAICS 420
+T+ P C+SS K K+ G+GT+ G+L++GTAE IP EL+DTTGAGDAFIGAV+YAIC+
Sbjct: 301 TTTFPTCVSSETTKLKANGVGTMTGRLFLGTAEKIPPEELVDTTGAGDAFIGAVLYAICA 360
Query: 419 KFSPETMLSFAANVAGAKCRDLGARSGLPYRTDPRLASFI 300
PE ML FAA VAG CR LGAR+GLP+RTDPRL F+
Sbjct: 361 GMPPEKMLPFAAQVAGCSCRALGARTGLPHRTDPRLVPFL 400
>ref|NP_199204.1| putative protein; protein id: At5g43910.1 [Arabidopsis thaliana]
Length = 354
Score = 73.9 bits (180), Expect = 1e-12
Identities = 38/71 (53%), Positives = 49/71 (68%)
Frame = -1
Query: 590 IPACISSPVAKFKSEGIGTVCGKLYVGTAESIPSSELIDTTGAGDAFIGAVIYAICSKFS 411
+P C SS V + G V G+L + TAE IPSSELIDTTGAGDAF GA++Y +C+ +
Sbjct: 271 LPVCNSSLVTRLT----GNVTGRLVIVTAEKIPSSELIDTTGAGDAFTGALLYGLCTGMA 326
Query: 410 PETMLSFAANV 378
E ML+FA+ V
Sbjct: 327 LEEMLTFASRV 337
>gb|AAK27804.1|AC022457_7 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 359
Score = 68.2 bits (165), Expect = 8e-11
Identities = 29/53 (54%), Positives = 40/53 (74%)
Frame = -1
Query: 590 IPACISSPVAKFKSEGIGTVCGKLYVGTAESIPSSELIDTTGAGDAFIGAVIY 432
+P C+SS + + G G + +L +GTAESIP+SEL+DTTG GDAFIGAV++
Sbjct: 302 LPTCVSSKFMRLTARGSGNIFARLLIGTAESIPASELVDTTGCGDAFIGAVLH 354
>ref|NP_458027.1| putative sugar kinase [Salmonella enterica subsp. enterica serovar
Typhi] gi|16767289|ref|NP_462904.1| putative sugar
kinase [Salmonella typhimurium LT2]
gi|29143898|ref|NP_807240.1| putative sugar kinase
[Salmonella enterica subsp. enterica serovar Typhi Ty2]
gi|25287470|pir||AH0947 probable sugar kinase STY3854
[imported] - Salmonella enterica subsp. enterica serovar
Typhi (strain CT18) gi|6979883|gb|AAF34639.1|AF220439_1
YihV [Salmonella typhimurium] gi|16422587|gb|AAL22863.1|
putative sugar kinase [Salmonella typhimurium LT2]
gi|16504714|emb|CAD09602.1| putative sugar kinase
[Salmonella enterica subsp. enterica serovar Typhi]
gi|29139534|gb|AAO71100.1| putative sugar kinase
[Salmonella enterica subsp. enterica serovar Typhi Ty2]
Length = 298
Score = 52.4 bits (124), Expect = 4e-06
Identities = 23/51 (45%), Positives = 34/51 (66%)
Frame = -1
Query: 485 ELIDTTGAGDAFIGAVIYAICSKFSPETMLSFAANVAGAKCRDLGARSGLP 333
E++DTTGAGD F GA+ + + S ++ E + FA+ VA KC G R+G+P
Sbjct: 235 EVVDTTGAGDVFHGALAFGLASGYAIEEAVRFASGVAALKCTRPGGRAGIP 285
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,627,008
Number of Sequences: 1393205
Number of extensions: 9808629
Number of successful extensions: 29249
Number of sequences better than 10.0: 253
Number of HSP's better than 10.0 without gapping: 28340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29243
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
