Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004556A_C01 KMC004556A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG15401.1|AF188507_1 LBA isoform gamma [Mus musculus] 32 3.8
ref|NP_705626.1| ATP synthase F0 subunit 6 [Schizosaccharomyces ... 32 3.8
gb|AAG15400.1|AF188506_1 LBA isoform beta [Mus musculus] 32 3.8
ref|NP_109620.1| LPS-responsive beige-like anchor [Mus musculus]... 32 3.8
pir||T18233 probable transcription regulator protein - yeast (Ca... 32 5.0
>gb|AAG15401.1|AF188507_1 LBA isoform gamma [Mus musculus]
Length = 2579
Score = 32.3 bits (72), Expect = 3.8
Identities = 23/78 (29%), Positives = 37/78 (46%)
Frame = -2
Query: 502 HKMIKRGGSHVFNGSTVESAGDDSTNMSEIGTNALSLDQISPGDVSAVCSSVQSIGSDGS 323
H+M+ G ES D + N+SE A S +I+ DVS+V S + S
Sbjct: 1201 HEMLDGGMKATNLAGETESVSDCADNVSE--APATSEQKITKLDVSSVASDTERFELKAS 1258
Query: 322 TSTPAKRMKLRSVKIEKE 269
TST A + + ++I ++
Sbjct: 1259 TSTEAPQPQRHGLEISRQ 1276
>ref|NP_705626.1| ATP synthase F0 subunit 6 [Schizosaccharomyces japonicus]
gi|23506672|gb|AAN37919.1| ATP synthase F0 subunit 6
[Schizosaccharomyces japonicus]
Length = 256
Score = 32.3 bits (72), Expect = 3.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 228 LIITYTNLLGYDPYSFSILTDLSFILLAGVDVLPSLPIL 344
+ I TNL+G PYSF+I L F+L + +L IL
Sbjct: 97 VFILITNLIGLIPYSFAITAQLIFVLALSLTILTGSIIL 135
>gb|AAG15400.1|AF188506_1 LBA isoform beta [Mus musculus]
Length = 2792
Score = 32.3 bits (72), Expect = 3.8
Identities = 23/78 (29%), Positives = 37/78 (46%)
Frame = -2
Query: 502 HKMIKRGGSHVFNGSTVESAGDDSTNMSEIGTNALSLDQISPGDVSAVCSSVQSIGSDGS 323
H+M+ G ES D + N+SE A S +I+ DVS+V S + S
Sbjct: 1201 HEMLDGGMKATNLAGETESVSDCADNVSE--APATSEQKITKLDVSSVASDTERFELKAS 1258
Query: 322 TSTPAKRMKLRSVKIEKE 269
TST A + + ++I ++
Sbjct: 1259 TSTEAPQPQRHGLEISRQ 1276
>ref|NP_109620.1| LPS-responsive beige-like anchor [Mus musculus]
gi|10180266|gb|AAG14003.1|AF187731_1 LBA [Mus musculus]
Length = 2856
Score = 32.3 bits (72), Expect = 3.8
Identities = 23/78 (29%), Positives = 37/78 (46%)
Frame = -2
Query: 502 HKMIKRGGSHVFNGSTVESAGDDSTNMSEIGTNALSLDQISPGDVSAVCSSVQSIGSDGS 323
H+M+ G ES D + N+SE A S +I+ DVS+V S + S
Sbjct: 1201 HEMLDGGMKATNLAGETESVSDCADNVSE--APATSEQKITKLDVSSVASDTERFELKAS 1258
Query: 322 TSTPAKRMKLRSVKIEKE 269
TST A + + ++I ++
Sbjct: 1259 TSTEAPQPQRHGLEISRQ 1276
>pir||T18233 probable transcription regulator protein - yeast (Candida albicans)
gi|3859717|emb|CAA21991.1| possible regulatory protein
[Candida albicans]
Length = 662
Score = 32.0 bits (71), Expect = 5.0
Identities = 19/53 (35%), Positives = 25/53 (46%), Gaps = 3/53 (5%)
Frame = -2
Query: 445 AGDDSTNMSEIGTNALSLDQISPGDVSAVCSSVQ---SIGSDGSTSTPAKRMK 296
+ S+N + IG N QI P V+ Q S S STSTP K++K
Sbjct: 285 SSSSSSNQNNIGNNTPPATQIKPSVVTVAAIGDQNNNSASSASSTSTPVKKLK 337
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,301,239
Number of Sequences: 1393205
Number of extensions: 8828667
Number of successful extensions: 20849
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20847
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
