Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004550A_C01 KMC004550A_c01
(718 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB81546.1| 25.7 kDa protein [Cicer arietinum] 143 2e-33
pir||E96507 hypothetical protein T12C22.11 [imported] - Arabidop... 72 6e-12
dbj|BAC42869.1| unknown protein [Arabidopsis thaliana] gi|289731... 72 6e-12
ref|NP_175105.1| unknown protein; protein id: At1g44835.1 [Arabi... 72 6e-12
ref|NP_012095.1| vps ten homolog; Vth1p [Saccharomyces cerevisia... 32 8.9
>emb|CAB81546.1| 25.7 kDa protein [Cicer arietinum]
Length = 236
Score = 143 bits (361), Expect = 2e-33
Identities = 73/95 (76%), Positives = 81/95 (84%), Gaps = 1/95 (1%)
Frame = -2
Query: 717 VGNNTKGTPVNSVRSS-GYADVGQFVEEILHKTSELLLSEIKEETIGLHGEHLSTVVCDK 541
VGNN+KGT +V+SS YADVGQ VEEILHKTS+LLLSEI EETI +HGE L T V DK
Sbjct: 142 VGNNSKGTLDKNVQSSRSYADVGQLVEEILHKTSKLLLSEINEETIKIHGEQLGTTVSDK 201
Query: 540 LQKNLNSDLKNLAMIFKNTAYTEGFHAGTQHQPRR 436
LQK+L+SD KNLAM+FKNTAYTEGFHAGT HQPRR
Sbjct: 202 LQKHLSSDFKNLAMMFKNTAYTEGFHAGTHHQPRR 236
>pir||E96507 hypothetical protein T12C22.11 [imported] - Arabidopsis thaliana
gi|8655994|gb|AAF78267.1|AC020576_11 Contains weak
similarity to 25.7 kDa protein from Cicer arietinum
gb|AJ276422 and contains a transposase mutator PF|00872
domain. ESTs gb|T13756, gb|AA712647, gb|AA585980 come
from this gene. [Arabidopsis thaliana]
Length = 1206
Score = 72.4 bits (176), Expect = 6e-12
Identities = 37/79 (46%), Positives = 54/79 (67%)
Frame = -2
Query: 672 SGYADVGQFVEEILHKTSELLLSEIKEETIGLHGEHLSTVVCDKLQKNLNSDLKNLAMIF 493
S Y + +FV+EIL KTS LLLSE K E + + + L+K L S+L +L++++
Sbjct: 168 SAYKNPEKFVQEILDKTSALLLSEAKGECV--------EALAETLRKRLTSELTHLSIMY 219
Query: 492 KNTAYTEGFHAGTQHQPRR 436
KN+AY EGF+AGT+HQP+R
Sbjct: 220 KNSAYAEGFYAGTRHQPKR 238
>dbj|BAC42869.1| unknown protein [Arabidopsis thaliana] gi|28973135|gb|AAO63892.1|
unknown protein [Arabidopsis thaliana]
Length = 307
Score = 72.4 bits (176), Expect = 6e-12
Identities = 37/79 (46%), Positives = 54/79 (67%)
Frame = -2
Query: 672 SGYADVGQFVEEILHKTSELLLSEIKEETIGLHGEHLSTVVCDKLQKNLNSDLKNLAMIF 493
S Y + +FV+EIL KTS LLLSE K E + + + L+K L S+L +L++++
Sbjct: 236 SAYKNPEKFVQEILDKTSALLLSEAKGECV--------EALAETLRKRLTSELTHLSIMY 287
Query: 492 KNTAYTEGFHAGTQHQPRR 436
KN+AY EGF+AGT+HQP+R
Sbjct: 288 KNSAYAEGFYAGTRHQPKR 306
>ref|NP_175105.1| unknown protein; protein id: At1g44835.1 [Arabidopsis thaliana]
Length = 239
Score = 72.4 bits (176), Expect = 6e-12
Identities = 37/79 (46%), Positives = 54/79 (67%)
Frame = -2
Query: 672 SGYADVGQFVEEILHKTSELLLSEIKEETIGLHGEHLSTVVCDKLQKNLNSDLKNLAMIF 493
S Y + +FV+EIL KTS LLLSE K E + + + L+K L S+L +L++++
Sbjct: 168 SAYKNPEKFVQEILDKTSALLLSEAKGECV--------EALAETLRKRLTSELTHLSIMY 219
Query: 492 KNTAYTEGFHAGTQHQPRR 436
KN+AY EGF+AGT+HQP+R
Sbjct: 220 KNSAYAEGFYAGTRHQPKR 238
>ref|NP_012095.1| vps ten homolog; Vth1p [Saccharomyces cerevisiae]
gi|731899|sp|P40438|YIR3_YEAST PUTATIVE MEMBRANE
GLYCOPROTEIN YIL173W PRECURSOR gi|600804|emb|CAA87019.1|
unknown [Saccharomyces cerevisiae]
Length = 1549
Score = 32.0 bits (71), Expect = 8.9
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = -2
Query: 684 SVRSSGYADVGQFVEEILHKTSELLLSEIKEETIGLHGEHLSTVVCDKLQKNLNSDL--- 514
++++SG VG+ EI + S++K + G H+ST CD ++ + +SDL
Sbjct: 146 TIKNSGLMYVGR---EIYTTNDGVSFSQVKPSFGKIDG-HISTARCDFIKSSEDSDLGGN 201
Query: 513 -KNLAMIFKNTAYTE 472
++ +F+NT Y E
Sbjct: 202 DASILCLFRNTEYIE 216
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,217,228
Number of Sequences: 1393205
Number of extensions: 11438191
Number of successful extensions: 23906
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23895
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33217548346
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
