Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004547A_C01 KMC004547A_c01
(660 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567650.1| expressed protein; protein id: At4g22190.1, sup... 42 0.007
gb|AAM20458.1| unknown protein [Arabidopsis thaliana] gi|2213635... 42 0.007
pir||S34960 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 37 0.18
gb|EAA21958.1| PfSec61 [Plasmodium yoelii yoelii] 34 1.5
dbj|BAA77326.1| P-Type ATPase [Plasmodium yoelii] 33 4.4
>ref|NP_567650.1| expressed protein; protein id: At4g22190.1, supported by cDNA:
6848. [Arabidopsis thaliana] gi|7486831|pir||T04900
hypothetical protein T10I14.20 - Arabidopsis thaliana
gi|2832669|emb|CAA16769.1| hypothetical protein
[Arabidopsis thaliana] gi|7269064|emb|CAB79174.1|
hypothetical protein [Arabidopsis thaliana]
Length = 339
Score = 42.0 bits (97), Expect = 0.007
Identities = 23/61 (37%), Positives = 37/61 (59%), Gaps = 3/61 (4%)
Frame = -1
Query: 660 VLNVNVPICIG--NHLSCRSDGNSGGSDYNSGG-SDFRGSYRGHSDVGGKIFNLRSFFSK 490
VLN+NVP+CIG + LSCR++ +SGG + N G ++ + ++ +F R+ F K
Sbjct: 277 VLNLNVPMCIGYRSRLSCRTEESSGGGNSNIGSDNNNNNNANANNPNPNGLFGFRNLFIK 336
Query: 489 K 487
K
Sbjct: 337 K 337
>gb|AAM20458.1| unknown protein [Arabidopsis thaliana] gi|22136352|gb|AAM91254.1|
unknown protein [Arabidopsis thaliana]
Length = 387
Score = 42.0 bits (97), Expect = 0.007
Identities = 23/61 (37%), Positives = 37/61 (59%), Gaps = 3/61 (4%)
Frame = -1
Query: 660 VLNVNVPICIG--NHLSCRSDGNSGGSDYNSGG-SDFRGSYRGHSDVGGKIFNLRSFFSK 490
VLN+NVP+CIG + LSCR++ +SGG + N G ++ + ++ +F R+ F K
Sbjct: 325 VLNLNVPMCIGYRSRLSCRTEESSGGGNSNIGSDNNNNNNANANNPNPNGLFGFRNLFIK 384
Query: 489 K 487
K
Sbjct: 385 K 385
>pir||S34960 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Crithidia
oncopelti mitochondrion gi|12882|emb|CAA39492.1| NADH
dehydrogenase subunit 5 [Crithidia oncopelti]
Length = 590
Score = 37.4 bits (85), Expect = 0.18
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Frame = -1
Query: 300 FLPCIQTFIKLVFVLLLNFRFLYLFSFF----YLCKESYKSIY--LNTVFVCNRKGICF* 139
F C+ + LVF LL + +L F+ LC S + L +FVC I F
Sbjct: 364 FCGCVLARMLLVFALLNSCSLWFLCGFYCKDLLLCTLMLVSFHFILEFLFVC----IFFI 419
Query: 138 PYKLGYRTRLVNVMASLIKC-----CVFVFYLLSSCNLKCFIRMYLNYLLI 1
+ + Y L+ + + KC C+F+ + C + CF+ +Y+ ++LI
Sbjct: 420 FFTVIYNYFLLFFLCFVFKCFCLADCLFLLFDFECCLIYCFLGLYMCFILI 470
>gb|EAA21958.1| PfSec61 [Plasmodium yoelii yoelii]
Length = 519
Score = 34.3 bits (77), Expect = 1.5
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = -1
Query: 267 VFVLLLNFRFLYLFSFFYLCKESYKSIYLNTVFVCNR 157
+ + ++NF Y+FS+ Y+C ++K +Y +++CNR
Sbjct: 1 MLIFIINFFNGYIFSYMYVCTTAHKQLY--ELYICNR 35
>dbj|BAA77326.1| P-Type ATPase [Plasmodium yoelii]
Length = 1877
Score = 32.7 bits (73), Expect = 4.4
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = -1
Query: 417 YLLH*H*FVIITATTDTVCMS*YTVENHSKTNSNLL*L*FLPCIQTFIKLVFVLLLNFRF 238
YL + +++ A + T+ Y ++ + T+S + QT + L+ L++NF F
Sbjct: 1641 YLFFDNIILLLLAKSMTLSKPEYKLKTQTPTSSII-------GAQTILSLLCTLIVNFFF 1693
Query: 237 LY--LFSFFYLC 208
LY +F FF+LC
Sbjct: 1694 LYIIMFKFFFLC 1705
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,457,990
Number of Sequences: 1393205
Number of extensions: 10396480
Number of successful extensions: 34223
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 30128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33874
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
