Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004540A_C01 KMC004540A_c01
(614 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196469.1| putative protein; protein id: At5g08520.1, supp... 85 9e-16
ref|NP_197754.1| putative protein; protein id: At5g23650.1 [Arab... 49 4e-05
pir||A26601 elastin precursor - chicken (fragment) 41 0.014
gb|AAA49082.1| tropoelastin 41 0.014
sp|P07916|ELS_CHICK Elastin precursor (Tropoelastin) gi|212804|g... 41 0.014
>ref|NP_196469.1| putative protein; protein id: At5g08520.1, supported by cDNA:
gi_18175699, supported by cDNA: gi_20465998 [Arabidopsis
thaliana] gi|9759346|dbj|BAB10001.1| contains similarity
to I-box binding factor~gene_id:MAH20.8 [Arabidopsis
thaliana] gi|18175700|gb|AAL59913.1| unknown protein
[Arabidopsis thaliana] gi|20465999|gb|AAM20221.1|
unknown protein [Arabidopsis thaliana]
Length = 298
Score = 84.7 bits (208), Expect = 9e-16
Identities = 46/88 (52%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Frame = -2
Query: 601 DSSGKSSIQTPPTPTGAPGVGIYGVPTLGQPVGGPLVSAVGTPVNLAGPAHMAYGLRA-P 425
+ S K ++ P PG +YG P +GQP AVGTPVNL P HMAYG+ A P
Sbjct: 223 NKSAKQAVSQAP-----PGPPMYGTPAIGQP-------AVGTPVNLPAPPHMAYGVHAAP 270
Query: 424 VPGAVVPGAPMNLGHVPYPMPHT-SAHR 344
VPG+VVPGA MN+G +PY MP T +AHR
Sbjct: 271 VPGSVVPGAAMNIGQMPYTMPRTPTAHR 298
>ref|NP_197754.1| putative protein; protein id: At5g23650.1 [Arabidopsis thaliana]
gi|8809695|dbj|BAA97236.1| contains similarity to I-box
binding factor~gene_id:MQM1.9 [Arabidopsis thaliana]
Length = 337
Score = 49.3 bits (116), Expect = 4e-05
Identities = 23/59 (38%), Positives = 36/59 (60%), Gaps = 1/59 (1%)
Frame = -2
Query: 544 VGIYGVPTLGQPVGGPLVSAVGTPVNLAGPAHMAYGLR-APVPGAVVPGAPMNLGHVPY 371
+ +YG T+ QP+ GP++S GT +N P+HM G++ VP P AP+N+ +PY
Sbjct: 273 IPMYGTSTISQPMVGPMLSPFGTNLNHLAPSHMTSGVQHDSVPYYSGPSAPINMDSIPY 331
>pir||A26601 elastin precursor - chicken (fragment)
Length = 784
Score = 40.8 bits (94), Expect = 0.014
Identities = 30/64 (46%), Positives = 34/64 (52%), Gaps = 1/64 (1%)
Frame = -2
Query: 562 PTGAPGVGIYGVPTLGQPVGG-PLVSAVGTPVNLAGPAHMAYGLRAPVPGAVVPGAPMNL 386
P PGVG+ VP L VGG P V+ VGTP A A A A VPG VPG + +
Sbjct: 341 PGVVPGVGV--VPGLVPGVGGIPGVAGVGTPAGAAAAAAKAAKYGAGVPGVGVPG--VGI 396
Query: 385 GHVP 374
G VP
Sbjct: 397 GGVP 400
Score = 32.7 bits (73), Expect = 3.9
Identities = 28/72 (38%), Positives = 33/72 (44%), Gaps = 3/72 (4%)
Frame = -2
Query: 556 GAPGVGIYGVPTLGQPVGGPLVSAVGTPVNLAGPAHMAYGLRAP---VPGAVVPGAPMNL 386
G PGVG+ GV G V G V VG P + P G+ P VPG VPG +
Sbjct: 477 GVPGVGVPGVGVPGVGVPGVGVPGVGVP-GVGVPGVGVPGVGVPGVGVPGVGVPGVGVP- 534
Query: 385 GHVPYPMPHTSA 350
G VP P +A
Sbjct: 535 GLVPGAGPAAAA 546
Score = 32.0 bits (71), Expect = 6.6
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -2
Query: 562 PTGAPGVGIYGVPTLGQPVGGPLVSAVGTPVNLAGPAHMAYGLRAP---VPGAVVPGAPM 392
P PGVG+ GV G V G V VG P + P G+ P VPG VPG +
Sbjct: 470 PGAVPGVGVPGVGVPGVGVPGVGVPGVGVP-GVGVPGVGVPGVGVPGVGVPGVGVPGVGV 528
Query: 391 NLGHVPYPMP 362
VP +P
Sbjct: 529 PGVGVPGLVP 538
Score = 31.6 bits (70), Expect = 8.6
Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +3
Query: 393 MGAPGTTAPGTGALRPYAMCAGPARLTGVPTADTRG---PPTGCPRVGTPYIPTPGAPVG 563
+G PG PG G P G GVP G P G P VG P + PG VG
Sbjct: 476 VGVPGVGVPGVGV--PGVGVPG----VGVPGVGVPGVGVPGVGVPGVGVPGVGVPG--VG 527
Query: 564 VGGV 575
V GV
Sbjct: 528 VPGV 531
Score = 31.6 bits (70), Expect = 8.6
Identities = 23/68 (33%), Positives = 27/68 (38%), Gaps = 7/68 (10%)
Frame = +3
Query: 393 MGAPGTTAPGTGALRPYAMCAG-------PARLTGVPTADTRGPPTGCPRVGTPYIPTPG 551
+G P A A + A AG P + GV P G P VG P + PG
Sbjct: 441 VGGPAAAAAAKAAAKAAAFGAGRVPGVGVPGAVPGVGVPGVGVPGVGVPGVGVPGVGVPG 500
Query: 552 APVGVGGV 575
VGV GV
Sbjct: 501 --VGVPGV 506
>gb|AAA49082.1| tropoelastin
Length = 700
Score = 40.8 bits (94), Expect = 0.014
Identities = 30/64 (46%), Positives = 34/64 (52%), Gaps = 1/64 (1%)
Frame = -2
Query: 562 PTGAPGVGIYGVPTLGQPVGG-PLVSAVGTPVNLAGPAHMAYGLRAPVPGAVVPGAPMNL 386
P PGVG+ VP L VGG P V+ VGTP A A A A VPG VPG + +
Sbjct: 257 PGVVPGVGV--VPGLVPGVGGIPGVAGVGTPAGAAAAAAKAAKYGAGVPGVGVPG--VGI 312
Query: 385 GHVP 374
G VP
Sbjct: 313 GGVP 316
Score = 32.7 bits (73), Expect = 3.9
Identities = 28/72 (38%), Positives = 33/72 (44%), Gaps = 3/72 (4%)
Frame = -2
Query: 556 GAPGVGIYGVPTLGQPVGGPLVSAVGTPVNLAGPAHMAYGLRAP---VPGAVVPGAPMNL 386
G PGVG+ GV G V G V VG P + P G+ P VPG VPG +
Sbjct: 393 GVPGVGVPGVGVPGVGVPGVGVPGVGVP-GVGVPGVGVPGVGVPGVGVPGVGVPGVGVP- 450
Query: 385 GHVPYPMPHTSA 350
G VP P +A
Sbjct: 451 GLVPGAGPAAAA 462
Score = 32.0 bits (71), Expect = 6.6
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -2
Query: 562 PTGAPGVGIYGVPTLGQPVGGPLVSAVGTPVNLAGPAHMAYGLRAP---VPGAVVPGAPM 392
P PGVG+ GV G V G V VG P + P G+ P VPG VPG +
Sbjct: 386 PGAVPGVGVPGVGVPGVGVPGVGVPGVGVP-GVGVPGVGVPGVGVPGVGVPGVGVPGVGV 444
Query: 391 NLGHVPYPMP 362
VP +P
Sbjct: 445 PGVGVPGLVP 454
Score = 31.6 bits (70), Expect = 8.6
Identities = 25/64 (39%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +3
Query: 393 MGAPGTTAPGTGALRPYAMCAGPARLTGVPTADTRG---PPTGCPRVGTPYIPTPGAPVG 563
+G PG PG G P G GVP G P G P VG P + PG VG
Sbjct: 392 VGVPGVGVPGVGV--PGVGVPG----VGVPGVGVPGVGVPGVGVPGVGVPGVGVPG--VG 443
Query: 564 VGGV 575
V GV
Sbjct: 444 VPGV 447
Score = 31.6 bits (70), Expect = 8.6
Identities = 23/68 (33%), Positives = 27/68 (38%), Gaps = 7/68 (10%)
Frame = +3
Query: 393 MGAPGTTAPGTGALRPYAMCAG-------PARLTGVPTADTRGPPTGCPRVGTPYIPTPG 551
+G P A A + A AG P + GV P G P VG P + PG
Sbjct: 357 VGGPAAAAAAKAAAKAAAFGAGRVPGVGVPGAVPGVGVPGVGVPGVGVPGVGVPGVGVPG 416
Query: 552 APVGVGGV 575
VGV GV
Sbjct: 417 --VGVPGV 422
>sp|P07916|ELS_CHICK Elastin precursor (Tropoelastin) gi|212804|gb|AAA49108.1|
tropoelastin precursor
Length = 750
Score = 40.8 bits (94), Expect = 0.014
Identities = 30/64 (46%), Positives = 34/64 (52%), Gaps = 1/64 (1%)
Frame = -2
Query: 562 PTGAPGVGIYGVPTLGQPVGG-PLVSAVGTPVNLAGPAHMAYGLRAPVPGAVVPGAPMNL 386
P PGVG+ VP L VGG P V+ VGTP A A A A VPG VPG + +
Sbjct: 317 PGVVPGVGV--VPGLVPGVGGIPGVAGVGTPAGAAAAAAKAAKYGAGVPGVGVPG--VGI 372
Query: 385 GHVP 374
G VP
Sbjct: 373 GGVP 376
Score = 32.0 bits (71), Expect = 6.6
Identities = 28/72 (38%), Positives = 32/72 (43%), Gaps = 1/72 (1%)
Frame = -2
Query: 562 PTGAPGVGIYGVPTLGQPVGGPLVSAVGTP-VNLAGPAHMAYGLRAPVPGAVVPGAPMNL 386
P PGVG+ GV G V G V VG P V + G G VPG VPG +
Sbjct: 446 PGAVPGVGVPGVGVPGVGVPGVGVPGVGVPGVGVPGVGVPGVG----VPGVGVPGVGVP- 500
Query: 385 GHVPYPMPHTSA 350
G VP P +A
Sbjct: 501 GLVPGAGPAAAA 512
Score = 31.6 bits (70), Expect = 8.6
Identities = 23/68 (33%), Positives = 27/68 (38%), Gaps = 7/68 (10%)
Frame = +3
Query: 393 MGAPGTTAPGTGALRPYAMCAG-------PARLTGVPTADTRGPPTGCPRVGTPYIPTPG 551
+G P A A + A AG P + GV P G P VG P + PG
Sbjct: 417 VGGPAAAAAAKAAAKAAAFGAGRVPGVGVPGAVPGVGVPGVGVPGVGVPGVGVPGVGVPG 476
Query: 552 APVGVGGV 575
VGV GV
Sbjct: 477 --VGVPGV 482
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 600,714,123
Number of Sequences: 1393205
Number of extensions: 15034754
Number of successful extensions: 58902
Number of sequences better than 10.0: 279
Number of HSP's better than 10.0 without gapping: 49571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57950
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
