Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004527A_C01 KMC004527A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201433.1| GATA zinc finger protein; protein id: At5g66320... 139 2e-32
ref|NP_190677.1| GATA zinc finger protein; protein id: At3g51080... 130 1e-29
ref|NP_195347.1| GATA zinc finger protein; protein id: At4g36240... 128 5e-29
pir||T05288 GATA-binding transcription factor homolog 3 [importe... 127 9e-29
ref|NP_195194.1| GATA transcription factor 3; protein id: At4g34... 127 9e-29
>ref|NP_201433.1| GATA zinc finger protein; protein id: At5g66320.1 [Arabidopsis
thaliana] gi|10177426|dbj|BAB10711.1| GATA-binding
transcription factor-like protein [Arabidopsis thaliana]
gi|22531223|gb|AAM97115.1| GATA-binding transcription
factor-like protein [Arabidopsis thaliana]
Length = 339
Score = 139 bits (350), Expect = 2e-32
Identities = 66/92 (71%), Positives = 72/92 (77%), Gaps = 3/92 (3%)
Frame = -3
Query: 550 PAKKLKRKAEEV---EGAGAQSQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRL 380
P K KR AE V E Q QR+CSHC VQKTPQWR GP+GAKTLCNACGVRYKSGRL
Sbjct: 226 PKKHKKRSAESVFSGELQQLQPQRKCSHCGVQKTPQWRAGPMGAKTLCNACGVRYKSGRL 285
Query: 379 CSEYRPACSPTFCGEIHSNSHRKVLEIRRRKE 284
EYRPACSPTF E+HSN HRKV+E+RR+KE
Sbjct: 286 LPEYRPACSPTFSSELHSNHHRKVIEMRRKKE 317
>ref|NP_190677.1| GATA zinc finger protein; protein id: At3g51080.1, supported by
cDNA: gi_17381183 [Arabidopsis thaliana]
gi|11358891|pir||T45739 transcription factor-like
protein - Arabidopsis thaliana
gi|6562260|emb|CAB62630.1| transcription factor-like
protein [Arabidopsis thaliana]
gi|17381184|gb|AAL36404.1| putative transcription factor
[Arabidopsis thaliana] gi|21436205|gb|AAM51390.1|
putative transcription factor [Arabidopsis thaliana]
Length = 312
Score = 130 bits (326), Expect = 1e-29
Identities = 58/87 (66%), Positives = 67/87 (76%)
Frame = -3
Query: 544 KKLKRKAEEVEGAGAQSQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLCSEYR 365
KK+ + A + + R+C HC VQKTPQWR GPLGAKTLCNACGVRYKSGRL EYR
Sbjct: 203 KKVWKNAGQTQTQTQTQTRQCGHCGVQKTPQWRAGPLGAKTLCNACGVRYKSGRLLPEYR 262
Query: 364 PACSPTFCGEIHSNSHRKVLEIRRRKE 284
PACSPTF E+HSN H KV+E+RR+KE
Sbjct: 263 PACSPTFSSELHSNHHSKVIEMRRKKE 289
>ref|NP_195347.1| GATA zinc finger protein; protein id: At4g36240.1, supported by
cDNA: gi_18252998 [Arabidopsis thaliana]
gi|7486030|pir||T04593 hypothetical protein F23E13.130 -
Arabidopsis thaliana gi|2961383|emb|CAA18130.1| putative
protein [Arabidopsis thaliana]
gi|7270577|emb|CAB80295.1| putative protein [Arabidopsis
thaliana] gi|18252999|gb|AAL62426.1| putative protein
[Arabidopsis thaliana] gi|21389681|gb|AAM48039.1|
putative protein [Arabidopsis thaliana]
Length = 238
Score = 128 bits (321), Expect = 5e-29
Identities = 62/89 (69%), Positives = 68/89 (75%), Gaps = 3/89 (3%)
Frame = -3
Query: 544 KKLKRKAEEVEGAGAQSQ---RRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLCS 374
K+ ++K + G Q Q R CSHC VQKTPQWR GPLGAKTLCNACGVR+KSGRL
Sbjct: 143 KRGRQKVDASYGGVVQQQQLRRCCSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRLLP 202
Query: 373 EYRPACSPTFCGEIHSNSHRKVLEIRRRK 287
EYRPACSPTF EIHSNSHRKVLE+R K
Sbjct: 203 EYRPACSPTFTNEIHSNSHRKVLELRLMK 231
>pir||T05288 GATA-binding transcription factor homolog 3 [imported] -
Arabidopsis thaliana
Length = 269
Score = 127 bits (319), Expect = 9e-29
Identities = 59/85 (69%), Positives = 66/85 (77%)
Frame = -3
Query: 493 QRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLCSEYRPACSPTFCGEIHSNSHR 314
QRRCSHC TPQWRTGP+G KTLCNACGVR+KSGRLC EYRPA SPTF EIHSN HR
Sbjct: 179 QRRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHR 238
Query: 313 KVLEIRRRKEVVGPDAGLTPTQMVP 239
KVLE+R+ KE +G + G T+ P
Sbjct: 239 KVLELRKSKE-LGEETGEASTKSDP 262
>ref|NP_195194.1| GATA transcription factor 3; protein id: At4g34680.1, supported by
cDNA: gi_20466647 [Arabidopsis thaliana]
gi|25352341|pir||H85408 GATA transcription factor 3
[imported] - Arabidopsis thaliana
gi|2959734|emb|CAA74001.1| homologous to GATA-binding
transcription factors [Arabidopsis thaliana]
gi|5678627|emb|CAA18847.2| GATA transcription factor 3
[Arabidopsis thaliana] gi|7270419|emb|CAB80185.1| GATA
transcription factor 3 [Arabidopsis thaliana]
Length = 269
Score = 127 bits (319), Expect = 9e-29
Identities = 59/85 (69%), Positives = 66/85 (77%)
Frame = -3
Query: 493 QRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLCSEYRPACSPTFCGEIHSNSHR 314
QRRCSHC TPQWRTGP+G KTLCNACGVR+KSGRLC EYRPA SPTF EIHSN HR
Sbjct: 179 QRRCSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGRLCPEYRPADSPTFSNEIHSNLHR 238
Query: 313 KVLEIRRRKEVVGPDAGLTPTQMVP 239
KVLE+R+ KE +G + G T+ P
Sbjct: 239 KVLELRKSKE-LGEETGEASTKSDP 262
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 534,918,826
Number of Sequences: 1393205
Number of extensions: 13319886
Number of successful extensions: 63752
Number of sequences better than 10.0: 350
Number of HSP's better than 10.0 without gapping: 51550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61912
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
