Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004522A_C01 KMC004522A_c01
(709 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO22748.1| unknown protein [Arabidopsis thaliana] 80 2e-22
ref|NP_201088.1| putative protein; protein id: At5g62820.1 [Arab... 68 8e-17
ref|NP_181174.1| hypothetical protein; protein id: At2g36330.1 [... 57 2e-15
ref|NP_198846.1| putative protein; protein id: At5g40300.1 [Arab... 61 3e-14
dbj|BAB10851.1| gene_id:MQB2.14~unknown protein [Arabidopsis tha... 45 3e-10
>gb|AAO22748.1| unknown protein [Arabidopsis thaliana]
Length = 283
Score = 80.5 bits (197), Expect(2) = 2e-22
Identities = 36/62 (58%), Positives = 47/62 (75%)
Frame = -3
Query: 707 YAAFQASDLGYQLYAGRQLINHHPHFHFDFFMDQVLAYLLISTASSAATRLDDWQSNWGK 528
Y++FQA DL Y L + LI+HH F+F +DQVLAYLL+S +++A TR+DDW SNWGK
Sbjct: 186 YSSFQACDLAYHLVKEKHLISHHLRPLFEFIIDQVLAYLLMSASTAAVTRVDDWVSNWGK 245
Query: 527 DE 522
DE
Sbjct: 246 DE 247
Score = 47.8 bits (112), Expect(2) = 2e-22
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = -1
Query: 529 KMRFTEMASASIGLAFPAFIAFAVSSLISGYDL 431
K FTEMASASI ++F AF+AFA SSLISGY+L
Sbjct: 245 KDEFTEMASASIAMSFLAFLAFAFSSLISGYNL 277
>ref|NP_201088.1| putative protein; protein id: At5g62820.1 [Arabidopsis thaliana]
Length = 297
Score = 67.8 bits (164), Expect(2) = 8e-17
Identities = 34/62 (54%), Positives = 42/62 (66%)
Frame = -3
Query: 707 YAAFQASDLGYQLYAGRQLINHHPHFHFDFFMDQVLAYLLISTASSAATRLDDWQSNWGK 528
Y+AF+A D + +IN H F F MDQ+LAYLL+S +S AATR+DDW SNWGK
Sbjct: 200 YSAFEACDAACYIAKESYMINCGFHDLFVFSMDQLLAYLLMSASSCAATRVDDWVSNWGK 259
Query: 527 DE 522
DE
Sbjct: 260 DE 261
Score = 41.2 bits (95), Expect(2) = 8e-17
Identities = 22/35 (62%), Positives = 27/35 (76%)
Frame = -1
Query: 529 KMRFTEMASASIGLAFPAFIAFAVSSLISGYDLCT 425
K FT+MA+ASI ++F AF AFAVS+LIS Y L T
Sbjct: 259 KDEFTQMATASIAVSFLAFGAFAVSALISSYRLFT 293
>ref|NP_181174.1| hypothetical protein; protein id: At2g36330.1 [Arabidopsis
thaliana] gi|25408462|pir||D84779 hypothetical protein
At2g36330 [imported] - Arabidopsis thaliana
gi|4510344|gb|AAD21433.1| hypothetical protein
[Arabidopsis thaliana]
Length = 431
Score = 56.6 bits (135), Expect(2) = 2e-15
Identities = 28/60 (46%), Positives = 36/60 (59%)
Frame = -3
Query: 701 AFQASDLGYQLYAGRQLINHHPHFHFDFFMDQVLAYLLISTASSAATRLDDWQSNWGKDE 522
+FQA DL Y L + LI+HH F+F +DQ ++A TR+DDW SNWGKDE
Sbjct: 346 SFQACDLAYHLVKEKHLISHHLRPLFEFIIDQ----------ATAVTRVDDWVSNWGKDE 395
Score = 47.8 bits (112), Expect(2) = 2e-15
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = -1
Query: 529 KMRFTEMASASIGLAFPAFIAFAVSSLISGYDL 431
K FTEMASASI ++F AF+AFA SSLISGY+L
Sbjct: 393 KDEFTEMASASIAMSFLAFLAFAFSSLISGYNL 425
>ref|NP_198846.1| putative protein; protein id: At5g40300.1 [Arabidopsis thaliana]
gi|10178139|dbj|BAB11584.1| gene_id:MPO12.1~unknown
protein [Arabidopsis thaliana]
Length = 270
Score = 60.8 bits (146), Expect(2) = 3e-14
Identities = 28/62 (45%), Positives = 39/62 (62%)
Frame = -3
Query: 707 YAAFQASDLGYQLYAGRQLINHHPHFHFDFFMDQVLAYLLISTASSAATRLDDWQSNWGK 528
Y+ F DL Y L + H+ +F +DQ+LAYLL S ++SA+ R+DDWQSNWG
Sbjct: 173 YSGFMICDLVYLLSTSIRRSRHNLRHFLEFGLDQMLAYLLASASTSASIRVDDWQSNWGA 232
Query: 527 DE 522
D+
Sbjct: 233 DK 234
Score = 39.3 bits (90), Expect(2) = 3e-14
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = -1
Query: 523 RFTEMASASIGLAFPAFIAFAVSSLISGYDLCTI 422
+F ++A AS+ L++ +F+AFA SL SGY LC +
Sbjct: 234 KFPDLARASVALSYVSFVAFAFCSLASGYALCAL 267
>dbj|BAB10851.1| gene_id:MQB2.14~unknown protein [Arabidopsis thaliana]
Length = 273
Score = 45.4 bits (106), Expect(2) = 3e-10
Identities = 27/59 (45%), Positives = 31/59 (51%)
Frame = -3
Query: 698 FQASDLGYQLYAGRQLINHHPHFHFDFFMDQVLAYLLISTASSAATRLDDWQSNWGKDE 522
F+A D + +IN H F F MDQV SAATR+DDW SNWGKDE
Sbjct: 189 FEACDAACYIAKESYMINCGFHDLFVFSMDQV----------SAATRVDDWVSNWGKDE 237
Score = 41.2 bits (95), Expect(2) = 3e-10
Identities = 22/35 (62%), Positives = 27/35 (76%)
Frame = -1
Query: 529 KMRFTEMASASIGLAFPAFIAFAVSSLISGYDLCT 425
K FT+MA+ASI ++F AF AFAVS+LIS Y L T
Sbjct: 235 KDEFTQMATASIAVSFLAFGAFAVSALISSYRLFT 269
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 609,386,857
Number of Sequences: 1393205
Number of extensions: 13157675
Number of successful extensions: 33292
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 32243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33272
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32373034405
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
