Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004504A_C02 KMC004504A_c02
(714 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51239 scarecrow-like protein 8 [imported] - Arabidopsis th... 164 1e-39
ref|NP_200064.2| SCARECROW transcriptional regulator-like; prote... 164 1e-39
dbj|BAB10182.1| SCARECROW transcriptional regulator-like [Arabid... 164 1e-39
gb|AAO72545.1| scarecrow transcriptional regulator-like protein ... 128 7e-29
ref|NP_173566.1| scarecrow-like 1; protein id: At1g21450.1, supp... 119 3e-26
>pir||T51239 scarecrow-like protein 8 [imported] - Arabidopsis thaliana
(fragment) gi|4580523|gb|AAD24408.1|AF036305_1
scarecrow-like 8 [Arabidopsis thaliana]
Length = 573
Score = 164 bits (414), Expect = 1e-39
Identities = 78/129 (60%), Positives = 102/129 (78%), Gaps = 4/129 (3%)
Frame = -3
Query: 712 NTNTAPFVPRVTESCSYYSALFDSIESTVARESLERVKIEQGLSRKVGNSVACEGRDRVE 533
N+NTAPF+ RV+ESC+ Y AL +S+ESTV + +R K+E+G+ RK+ N+VACEG DR+E
Sbjct: 448 NSNTAPFLGRVSESCACYGALLESVESTVPSTNSDRAKVEEGIGRKLVNAVACEGIDRIE 507
Query: 532 RCEVFGKWRARMSMAGFRLRPVGQRVAESITAQLGAENRV----TVKEENGGICCGWVGR 365
RCEVFGKWR RMSMAGF L P+ +++AES+ ++ NRV TVKE+NGG+C GW+GR
Sbjct: 508 RCEVFGKWRMRMSMAGFELMPLSEKIAESMKSR---GNRVHPGFTVKEDNGGVCFGWMGR 564
Query: 364 TLTVASAWR 338
LTVASAWR
Sbjct: 565 ALTVASAWR 573
>ref|NP_200064.2| SCARECROW transcriptional regulator-like; protein id: At5g52510.1,
supported by cDNA: gi_20466439 [Arabidopsis thaliana]
gi|20466440|gb|AAM20537.1| SCARECROW transcriptional
regulator-like [Arabidopsis thaliana]
gi|22136380|gb|AAM91268.1| SCARECROW transcriptional
regulator-like [Arabidopsis thaliana]
Length = 371
Score = 164 bits (414), Expect = 1e-39
Identities = 78/129 (60%), Positives = 102/129 (78%), Gaps = 4/129 (3%)
Frame = -3
Query: 712 NTNTAPFVPRVTESCSYYSALFDSIESTVARESLERVKIEQGLSRKVGNSVACEGRDRVE 533
N+NTAPF+ RV+ESC+ Y AL +S+ESTV + +R K+E+G+ RK+ N+VACEG DR+E
Sbjct: 246 NSNTAPFLGRVSESCACYGALLESVESTVPSTNSDRAKVEEGIGRKLVNAVACEGIDRIE 305
Query: 532 RCEVFGKWRARMSMAGFRLRPVGQRVAESITAQLGAENRV----TVKEENGGICCGWVGR 365
RCEVFGKWR RMSMAGF L P+ +++AES+ ++ NRV TVKE+NGG+C GW+GR
Sbjct: 306 RCEVFGKWRMRMSMAGFELMPLSEKIAESMKSR---GNRVHPGFTVKEDNGGVCFGWMGR 362
Query: 364 TLTVASAWR 338
LTVASAWR
Sbjct: 363 ALTVASAWR 371
>dbj|BAB10182.1| SCARECROW transcriptional regulator-like [Arabidopsis thaliana]
Length = 640
Score = 164 bits (414), Expect = 1e-39
Identities = 78/129 (60%), Positives = 102/129 (78%), Gaps = 4/129 (3%)
Frame = -3
Query: 712 NTNTAPFVPRVTESCSYYSALFDSIESTVARESLERVKIEQGLSRKVGNSVACEGRDRVE 533
N+NTAPF+ RV+ESC+ Y AL +S+ESTV + +R K+E+G+ RK+ N+VACEG DR+E
Sbjct: 515 NSNTAPFLGRVSESCACYGALLESVESTVPSTNSDRAKVEEGIGRKLVNAVACEGIDRIE 574
Query: 532 RCEVFGKWRARMSMAGFRLRPVGQRVAESITAQLGAENRV----TVKEENGGICCGWVGR 365
RCEVFGKWR RMSMAGF L P+ +++AES+ ++ NRV TVKE+NGG+C GW+GR
Sbjct: 575 RCEVFGKWRMRMSMAGFELMPLSEKIAESMKSR---GNRVHPGFTVKEDNGGVCFGWMGR 631
Query: 364 TLTVASAWR 338
LTVASAWR
Sbjct: 632 ALTVASAWR 640
>gb|AAO72545.1| scarecrow transcriptional regulator-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 618
Score = 128 bits (322), Expect = 7e-29
Identities = 62/126 (49%), Positives = 87/126 (68%), Gaps = 1/126 (0%)
Frame = -3
Query: 712 NTNTAPFVPRVTESCSYYSALFDSIESTVARESLERVKIEQGLSRKVGNSVACEGRDRVE 533
NTNTAP R +++ ++Y A+ +S+++T+ R+S +R + E L+ KV N+V EG DRVE
Sbjct: 493 NTNTAPMAARFSDASAHYGAVLESLDATLGRDSADRTRAEAALASKVANAVGREGPDRVE 552
Query: 532 RCEVFGKWRARMSMAGFRLRPVGQRVAESITAQLG-AENRVTVKEENGGICCGWVGRTLT 356
RCEVFGKWRAR MAGFR +G+ + + A+LG A VK +NG + GW+GR +T
Sbjct: 553 RCEVFGKWRARFGMAGFRAVAIGEDIGGRVRARLGPALPAFDVKLDNGRLGVGWMGRVVT 612
Query: 355 VASAWR 338
VASAWR
Sbjct: 613 VASAWR 618
>ref|NP_173566.1| scarecrow-like 1; protein id: At1g21450.1, supported by cDNA:
109490., supported by cDNA: gi_15027952, supported by
cDNA: gi_20465586, supported by cDNA: gi_6644389
[Arabidopsis thaliana] gi|25518102|pir||E86347
scarecrow-like 1 protein F24J8.8 - Arabidopsis thaliana
gi|6644390|gb|AAF21043.1|AF210731_1 scarecrow-like 1
[Arabidopsis thaliana]
gi|9454575|gb|AAF87898.1|AC015447_8 scarecrow-like 1
protein [Arabidopsis thaliana]
gi|15027953|gb|AAK76507.1| putative scarecrow 1 protein
[Arabidopsis thaliana] gi|20465587|gb|AAM20276.1|
unknown protein [Arabidopsis thaliana]
gi|21536730|gb|AAM61062.1| scarecrow-like 1 [Arabidopsis
thaliana]
Length = 593
Score = 119 bits (299), Expect = 3e-26
Identities = 62/128 (48%), Positives = 86/128 (66%), Gaps = 3/128 (2%)
Frame = -3
Query: 712 NTNTAPFVPRVTESCSYYSALFDSIESTVARESLERVKIE-QGLSRKVGNSVACEGRDRV 536
NTNT+PF PR E+ YYSA+F+S++ T+ RES ER+ +E Q L+R + N VACEG +R+
Sbjct: 466 NTNTSPFFPRFIEAYEYYSAVFESLDMTLPRESQERMNVERQCLARDIVNIVACEGEERI 525
Query: 535 ERCEVFGKWRARMSMAGFRLRPVGQRVAESITAQLGAE--NRVTVKEENGGICCGWVGRT 362
ER E GKWRARM MAGF +P+ +V +I + + N+ +KEE G + W ++
Sbjct: 526 ERYEAAGKWRARMMMAGFNPKPMSAKVTNNIQNLIKQQYCNKYKLKEEMGELHFCWEEKS 585
Query: 361 LTVASAWR 338
L VASAWR
Sbjct: 586 LIVASAWR 593
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 663,931,401
Number of Sequences: 1393205
Number of extensions: 16534602
Number of successful extensions: 65428
Number of sequences better than 10.0: 418
Number of HSP's better than 10.0 without gapping: 54000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63069
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
