Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004501A_C01 KMC004501A_c01
(726 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190365.1| putative protein; protein id: At3g47810.1 [Arab... 265 5e-70
gb|AAH45981.1| Similar to vacuolar protein sorting 29 (S. pombe)... 191 7e-48
dbj|BAB23170.1| unnamed protein product [Mus musculus] 190 2e-47
ref|XP_213780.1| similar to vacuolar protein sorting 29; vacuola... 190 2e-47
ref|NP_062754.1| vacuolar protein sorting 29; vacuolar sorting p... 190 2e-47
>ref|NP_190365.1| putative protein; protein id: At3g47810.1 [Arabidopsis thaliana]
gi|7487365|pir||T07720 VPS29-like
phosphoesterase-related protein T23J7.140 [similarity] -
Arabidopsis thaliana gi|4741198|emb|CAB41864.1| putative
protein [Arabidopsis thaliana]
gi|27754298|gb|AAO22602.1| unknown protein [Arabidopsis
thaliana] gi|28393867|gb|AAO42341.1| unknown protein
[Arabidopsis thaliana]
Length = 190
Score = 265 bits (677), Expect = 5e-70
Identities = 122/143 (85%), Positives = 133/143 (92%)
Frame = -3
Query: 724 KEVHDYLRTLCPDLHITRGEYDEETKYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 545
KE+HDYL+T+CPDLHI RGE+DE+ +YPE KTLTIGQFKLGLCHGHQVIPWGDLDSLAML
Sbjct: 44 KEIHDYLKTICPDLHIVRGEFDEDARYPENKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 103
Query: 544 QRQLGVDILITGHTHQFTAYKHEGGVVINPGSATGAYSSMTYDVNPSFVLMDLDALRVVV 365
QRQLGVDIL+TGHTHQFTAYKHEGGVVINPGSATGAYSS+ DVNPSFVLMD+D R VV
Sbjct: 104 QRQLGVDILVTGHTHQFTAYKHEGGVVINPGSATGAYSSINQDVNPSFVLMDIDGFRAVV 163
Query: 364 YVYELIDGEVKVDKIDFKKTSTS 296
YVYELIDGEVKVDKI+FKK T+
Sbjct: 164 YVYELIDGEVKVDKIEFKKPPTT 186
>gb|AAH45981.1| Similar to vacuolar protein sorting 29 (S. pombe) [Danio rerio]
Length = 182
Score = 191 bits (486), Expect = 7e-48
Identities = 87/140 (62%), Positives = 114/140 (81%)
Frame = -3
Query: 724 KEVHDYLRTLCPDLHITRGEYDEETKYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 545
KE +DYL+TL D+HI RG++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+L
Sbjct: 43 KESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 102
Query: 544 QRQLGVDILITGHTHQFTAYKHEGGVVINPGSATGAYSSMTYDVNPSFVLMDLDALRVVV 365
QRQL VDILI+GHTH+F A+++E INPGSATGAYS++ ++ PSFVLMD+ A VV
Sbjct: 103 QRQLDVDILISGHTHKFEAFENENKFYINPGSATGAYSALESNITPSFVLMDIQASTVVT 162
Query: 364 YVYELIDGEVKVDKIDFKKT 305
YVY+LI +VKV++I++KK+
Sbjct: 163 YVYQLIGDDVKVERIEYKKS 182
>dbj|BAB23170.1| unnamed protein product [Mus musculus]
Length = 186
Score = 190 bits (483), Expect = 2e-47
Identities = 86/140 (61%), Positives = 113/140 (80%)
Frame = -3
Query: 724 KEVHDYLRTLCPDLHITRGEYDEETKYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 545
KE +DYL+TL D+HI RG++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+L
Sbjct: 47 KESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 106
Query: 544 QRQLGVDILITGHTHQFTAYKHEGGVVINPGSATGAYSSMTYDVNPSFVLMDLDALRVVV 365
QRQ VDILI+GHTH+F A++HE INPGSATGAY+++ ++ PSFVLMD+ A VV
Sbjct: 107 QRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVT 166
Query: 364 YVYELIDGEVKVDKIDFKKT 305
YVY+LI +VKV++I++KK+
Sbjct: 167 YVYQLIGDDVKVERIEYKKS 186
>ref|XP_213780.1| similar to vacuolar protein sorting 29; vacuolar sorting protein
29; vacuolar protein sorting 29 (yeast); expressed
sequence AW049835 [Mus musculus] [Rattus norvegicus]
Length = 182
Score = 190 bits (483), Expect = 2e-47
Identities = 86/140 (61%), Positives = 113/140 (80%)
Frame = -3
Query: 724 KEVHDYLRTLCPDLHITRGEYDEETKYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 545
KE +DYL+TL D+HI RG++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+L
Sbjct: 43 KESYDYLKTLAGDVHIVRGDFDESLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 102
Query: 544 QRQLGVDILITGHTHQFTAYKHEGGVVINPGSATGAYSSMTYDVNPSFVLMDLDALRVVV 365
QRQ VDILI+GHTH+F A++HE INPGSATGAY+++ ++ PSFVLMD+ A VV
Sbjct: 103 QRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVT 162
Query: 364 YVYELIDGEVKVDKIDFKKT 305
YVY+LI +VKV++I++KK+
Sbjct: 163 YVYQLIGDDVKVERIEYKKS 182
>ref|NP_062754.1| vacuolar protein sorting 29; vacuolar sorting protein 29; vacuolar
protein sorting 29 (yeast); expressed sequence AW049835
[Mus musculus] gi|25453324|sp|Q9QZ88|VP29_MOUSE Vacuolar
protein sorting 29 (Vesicle protein sorting 29)
gi|6164953|gb|AAF04595.1|AF193794_1 vacuolar sorting
protein VPS29 [Mus musculus] gi|13542952|gb|AAH05663.1|
vacuolar protein sorting 29 (S. pombe) [Mus musculus]
Length = 182
Score = 190 bits (483), Expect = 2e-47
Identities = 86/140 (61%), Positives = 113/140 (80%)
Frame = -3
Query: 724 KEVHDYLRTLCPDLHITRGEYDEETKYPETKTLTIGQFKLGLCHGHQVIPWGDLDSLAML 545
KE +DYL+TL D+HI RG++DE YPE K +T+GQFK+GL HGHQVIPWGD+ SLA+L
Sbjct: 43 KESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALL 102
Query: 544 QRQLGVDILITGHTHQFTAYKHEGGVVINPGSATGAYSSMTYDVNPSFVLMDLDALRVVV 365
QRQ VDILI+GHTH+F A++HE INPGSATGAY+++ ++ PSFVLMD+ A VV
Sbjct: 103 QRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVT 162
Query: 364 YVYELIDGEVKVDKIDFKKT 305
YVY+LI +VKV++I++KK+
Sbjct: 163 YVYQLIGDDVKVERIEYKKS 182
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,984,531
Number of Sequences: 1393205
Number of extensions: 12950705
Number of successful extensions: 36789
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 35213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36724
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
