Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004498A_C01 KMC004498A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196321.1| C3HC4-type RING zinc finger protein-like; prote... 109 2e-23
ref|NP_174125.1| RING zinc finger protein, putative; protein id:... 107 8e-23
ref|NP_565593.1| similar to RING zinc finger protein, putative; ... 103 9e-22
ref|NP_671966.1| similar to RING zinc finger protein, putative; ... 98 7e-20
ref|NP_191714.1| putative protein; protein id: At3g61550.1, supp... 87 1e-16
>ref|NP_196321.1| C3HC4-type RING zinc finger protein-like; protein id: At5g07040.1
[Arabidopsis thaliana] gi|9759560|dbj|BAB11162.1|
C3HC4-type RING zinc finger protein-like [Arabidopsis
thaliana]
Length = 159
Score = 109 bits (272), Expect = 2e-23
Identities = 50/93 (53%), Positives = 63/93 (66%)
Frame = -2
Query: 483 LLNPRRTNNTGLDGPTIASYPKIVIGDEGTRLPKPDDKACPICLSEYMPKETVKTIPECE 304
L +P GLD P I SYP+IV+GD RLP+P++ C ICL +Y +E V+ IPEC
Sbjct: 56 LPSPAAEVKLGLDRPVIESYPRIVLGDS-RRLPRPNNGPCSICLCDYEAREPVRCIPECN 114
Query: 303 HCFHAQCIDEWLPLNASCPICRNSPRKLPQRLA 205
HCFH C+DEWL +A+CP+CRNSP P RLA
Sbjct: 115 HCFHTDCVDEWLRTSATCPLCRNSP--APSRLA 145
>ref|NP_174125.1| RING zinc finger protein, putative; protein id: At1g28040.1
[Arabidopsis thaliana] gi|25403049|pir||A86406 probable
RING zinc finger protein [imported] - Arabidopsis
thaliana gi|12322996|gb|AAG51486.1|AC069471_17 RING zinc
finger protein, putative [Arabidopsis thaliana]
Length = 336
Score = 107 bits (267), Expect = 8e-23
Identities = 47/75 (62%), Positives = 57/75 (75%)
Frame = -2
Query: 456 TGLDGPTIASYPKIVIGDEGTRLPKPDDKACPICLSEYMPKETVKTIPECEHCFHAQCID 277
TGLD TI SY K+ +G E RLP + CPICLSEY KETV+ +PEC+HCFH QCID
Sbjct: 261 TGLDQSTIESYKKVELG-ESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCID 319
Query: 276 EWLPLNASCPICRNS 232
EWL +++SCP+CRNS
Sbjct: 320 EWLKIHSSCPVCRNS 334
>ref|NP_565593.1| similar to RING zinc finger protein, putative; protein id:
At2g25410.1 [Arabidopsis thaliana]
gi|20197745|gb|AAD20701.2| predicted protein
[Arabidopsis thaliana]
Length = 377
Score = 103 bits (258), Expect = 9e-22
Identities = 47/79 (59%), Positives = 58/79 (72%), Gaps = 1/79 (1%)
Frame = -2
Query: 453 GLDGPTIASYPKIVIGDEGTRLPK-PDDKACPICLSEYMPKETVKTIPECEHCFHAQCID 277
GLD TI SY K+ +G E RLP +D CPICLSEY KETV+ +PECEHCFH +CID
Sbjct: 298 GLDESTIESYKKVELG-ESRRLPTGSNDVVCPICLSEYATKETVRCLPECEHCFHTECID 356
Query: 276 EWLPLNASCPICRNSPRKL 220
WL L++SCP+CR++P L
Sbjct: 357 AWLKLHSSCPVCRSNPSPL 375
>ref|NP_671966.1| similar to RING zinc finger protein, putative; protein id:
At2g46495.1 [Arabidopsis thaliana]
Length = 878
Score = 97.8 bits (242), Expect = 7e-20
Identities = 50/96 (52%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Frame = -2
Query: 516 WAREAVADFEPLLNPRRTNNT-GLDGPTIASYPKIVIGDEGTRLPKPDDKACPICLSEYM 340
WA A A + PR T GLD TI Y + +G E R P + CPICLSEY+
Sbjct: 566 WAVPAAAA-TVMQQPREVMATRGLDQSTIEKYKTMELG-ESRRPPGTNGIVCPICLSEYV 623
Query: 339 PKETVKTIPECEHCFHAQCIDEWLPLNASCPICRNS 232
KETV+ IPEC+HCFHA+CID WL ++ SCP+CRNS
Sbjct: 624 SKETVRFIPECDHCFHAKCIDVWLKIHGSCPLCRNS 659
Score = 95.9 bits (237), Expect = 3e-19
Identities = 46/92 (50%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = -2
Query: 504 AVADFEPLLNPRRTN-NTGLDGPTIASYPKIVIGDEGTRLPKPDDKACPICLSEYMPKET 328
A+A + PR GLD TI ++ K+ +G E RL + CPICLSEY KET
Sbjct: 786 AIAAATVMQQPREVMARRGLDQSTIETFKKMELG-ESRRLSGTNGIVCPICLSEYASKET 844
Query: 327 VKTIPECEHCFHAQCIDEWLPLNASCPICRNS 232
V+ IPEC+HCFH +CID WL ++ SCP+CRNS
Sbjct: 845 VRFIPECDHCFHVECIDVWLKIHGSCPLCRNS 876
Score = 47.4 bits (111), Expect = 1e-04
Identities = 27/46 (58%), Positives = 29/46 (62%), Gaps = 1/46 (2%)
Frame = -2
Query: 456 TGLDGPTIASYPKIVIGDEGTRLP-KPDDKACPICLSEYMPKETVK 322
TGLD I SY K +G E RLP DD CPICLSEY KETV+
Sbjct: 290 TGLDESIIESYKKTELG-ESRRLPGNNDDIVCPICLSEYASKETVR 334
>ref|NP_191714.1| putative protein; protein id: At3g61550.1, supported by cDNA:
gi_16226238 [Arabidopsis thaliana]
gi|11357712|pir||T47947 hypothetical protein F2A19.150 -
Arabidopsis thaliana gi|6850846|emb|CAB71085.1| putative
protein [Arabidopsis thaliana]
gi|16226239|gb|AAL16112.1|AF428280_1 AT3g61550/F2A19_150
[Arabidopsis thaliana] gi|21436049|gb|AAM51602.1|
AT3g61550/F2A19_150 [Arabidopsis thaliana]
Length = 212
Score = 87.0 bits (214), Expect = 1e-16
Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Frame = -2
Query: 453 GLDGPTIASYPKI--------VIGDEGTRLPKPDDKACPICLSEYMPKETVKTIPECEHC 298
GLD I SYPK V+ +G + + C ICL EYM +E ++ +PEC+H
Sbjct: 99 GLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYMEEEMLRMMPECKHY 158
Query: 297 FHAQCIDEWLPLNASCPICRNSPRKLPQ 214
FH C+D WL LN SCP+CRNSP PQ
Sbjct: 159 FHVYCLDAWLKLNGSCPVCRNSPLPTPQ 186
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,459,074
Number of Sequences: 1393205
Number of extensions: 10977316
Number of successful extensions: 27911
Number of sequences better than 10.0: 1285
Number of HSP's better than 10.0 without gapping: 26681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27637
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
