Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004497A_C01 KMC004497A_c01
(952 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN38985.1| LvsB [Dictyostelium discoideum] 33 6.4
gb|AAO51624.1| similar to Dictyostelium discoideum (Slime mold).... 33 6.4
>gb|AAN38985.1| LvsB [Dictyostelium discoideum]
Length = 3633
Score = 33.1 bits (74), Expect = 6.4
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Frame = +1
Query: 121 TQFIVHFLIYP----VYFYLESQPKYESPSHFLSITATVIGKHNNNQSLNIIKQ--ERSL 282
T+ + H P + F + + + + T +++ + N + S+N+I++ E SL
Sbjct: 1349 TESVTHASALPQLSTILFQQQQLQQQQLQQQITNSTTSILNELNLSNSINLIRRGSENSL 1408
Query: 283 LSFIESVSKEDSQITRTKHNNKS*NTRSLLSASVHFTF 396
++ S S S + T +NN + NTRS L S+ F
Sbjct: 1409 ITSSSSSSLSLSLSSNTNNNNNN-NTRSSLERSISGNF 1445
>gb|AAO51624.1| similar to Dictyostelium discoideum (Slime mold). LvsB
Length = 4118
Score = 33.1 bits (74), Expect = 6.4
Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Frame = +1
Query: 121 TQFIVHFLIYP----VYFYLESQPKYESPSHFLSITATVIGKHNNNQSLNIIKQ--ERSL 282
T+ + H P + F + + + + T +++ + N + S+N+I++ E SL
Sbjct: 1834 TESVTHASALPQLSTILFQQQQLQQQQLQQQITNSTTSILNELNLSNSINLIRRGSENSL 1893
Query: 283 LSFIESVSKEDSQITRTKHNNKS*NTRSLLSASVHFTF 396
++ S S S + T +NN + NTRS L S+ F
Sbjct: 1894 ITSSSSSSLSLSLSSNTNNNNNN-NTRSSLERSISGNF 1930
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 786,747,872
Number of Sequences: 1393205
Number of extensions: 16443099
Number of successful extensions: 32611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 30940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32605
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 53523731176
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
