Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004493A_C01 KMC004493A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181487.1| geranylgeranyl transferase type I beta subunit ... 191 6e-48
gb|AAG40865.1|AF311225_1 geranylgeranyltransferase beta subunit ... 189 2e-47
ref|NP_496848.1| Geranylgeranyltransferase type I (40.4 kD) [Cae... 98 7e-20
gb|EAA12255.1| agCP10934 [Anopheles gambiae str. PEST] 89 3e-17
gb|AAC46971.1| geranylgeranyl transferase beta-subunit type I 89 4e-17
>ref|NP_181487.1| geranylgeranyl transferase type I beta subunit (GGT-IB); protein
id: At2g39550.1, supported by cDNA: gi_11878246
[Arabidopsis thaliana] gi|7484977|pir||T00565
geranylgeranyl-diphosphate geranylgeranyltransferase I
beta chain homolog At2g39550 - Arabidopsis thaliana
gi|3355484|gb|AAC27846.1| putative geranylgeranyl
transferase type I beta subunit [Arabidopsis thaliana]
gi|27311719|gb|AAO00825.1| putative geranylgeranyl
transferase type I beta subunit [Arabidopsis thaliana]
Length = 375
Score = 191 bits (485), Expect = 6e-48
Identities = 90/134 (67%), Positives = 109/134 (81%)
Frame = -1
Query: 577 SLRFMGFIEDSILSSCSSSSLIDVPLLLDWTLQRQGTDGGFQGRPNKPSDTCYAFWIGAV 398
SLR MG+I +LS+ SSSS+ID LLL+W LQRQ DGGFQGR NKPSDTCYAFWIGAV
Sbjct: 242 SLRLMGYIGVDLLSNDSSSSIIDPSLLLNWCLQRQANDGGFQGRTNKPSDTCYAFWIGAV 301
Query: 397 LRILGGCNFVDKNAVREFLLACQYKYGGFSKFPEEFPDLYHTYYGFSAFSLLEESGLKSL 218
L+++GG +DK A+R+FL++CQ KYGGFSKFP + PDLYH+YYG++AFSLLEE GL L
Sbjct: 302 LKLIGGDALIDKMALRKFLMSCQSKYGGFSKFPGQLPDLYHSYYGYTAFSLLEEQGLSPL 361
Query: 217 CSELGITDLAAIGV 176
C ELG+ LAA G+
Sbjct: 362 CPELGLPLLAAPGI 375
Score = 35.8 bits (81), Expect = 0.40
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 1/138 (0%)
Frame = -1
Query: 520 SLIDVPLLLDWTLQRQGTDGGFQG-RPNKPSDTCYAFWIGAVLRILGGCNFVDKNAVREF 344
S ID LL + Q DG F +D + + A+ +L + +DK + + +
Sbjct: 153 STIDSKSLLISMINLQQDDGSFMPIHIGGETDLRFVYCAAAICYMLDSWSGMDKESAKNY 212
Query: 343 LLACQYKYGGFSKFPEEFPDLYHTYYGFSAFSLLEESGLKSLCSELGITDLAAIGV*L*V 164
+L CQ GGF P E G + C+ + + IGV L +
Sbjct: 213 ILNCQSYDGGFGLIPGS-----------------ESHGGATYCAIASLRLMGYIGVDL-L 254
Query: 163 SKFEMSCLGFPSL*LNFC 110
S S + PSL LN+C
Sbjct: 255 SNDSSSSIIDPSLLLNWC 272
>gb|AAG40865.1|AF311225_1 geranylgeranyltransferase beta subunit [Arabidopsis thaliana]
Length = 376
Score = 189 bits (480), Expect = 2e-47
Identities = 89/134 (66%), Positives = 108/134 (80%)
Frame = -1
Query: 577 SLRFMGFIEDSILSSCSSSSLIDVPLLLDWTLQRQGTDGGFQGRPNKPSDTCYAFWIGAV 398
SLR MG+I +LS+ SSSS+ID LLL+W LQRQ DGGFQGR NKPSDTCYAFWIGAV
Sbjct: 243 SLRLMGYIGVDLLSNDSSSSIIDPSLLLNWCLQRQANDGGFQGRTNKPSDTCYAFWIGAV 302
Query: 397 LRILGGCNFVDKNAVREFLLACQYKYGGFSKFPEEFPDLYHTYYGFSAFSLLEESGLKSL 218
L+++GG +DK A+R+FL++CQ KYGGFSKFP + PDLYH+YYG++AFSLLEE G L
Sbjct: 303 LKLIGGDALIDKMALRKFLMSCQSKYGGFSKFPGQLPDLYHSYYGYTAFSLLEEQGSSPL 362
Query: 217 CSELGITDLAAIGV 176
C ELG+ LAA G+
Sbjct: 363 CPELGLPFLAAPGI 376
Score = 35.8 bits (81), Expect = 0.40
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 1/138 (0%)
Frame = -1
Query: 520 SLIDVPLLLDWTLQRQGTDGGFQG-RPNKPSDTCYAFWIGAVLRILGGCNFVDKNAVREF 344
S ID LL + Q DG F +D + + A+ +L + +DK + + +
Sbjct: 154 STIDSKSLLISMINLQQDDGSFMPIHIGGETDLRFVYCAAAICYMLDSWSGMDKESAKNY 213
Query: 343 LLACQYKYGGFSKFPEEFPDLYHTYYGFSAFSLLEESGLKSLCSELGITDLAAIGV*L*V 164
+L CQ GGF P E G + C+ + + IGV L +
Sbjct: 214 ILNCQSYDGGFGLIPGS-----------------ESHGGATYCAIASLRLMGYIGVDL-L 255
Query: 163 SKFEMSCLGFPSL*LNFC 110
S S + PSL LN+C
Sbjct: 256 SNDSSSSIIDPSLLLNWC 273
>ref|NP_496848.1| Geranylgeranyltransferase type I (40.4 kD) [Caenorhabditis elegans]
gi|7510015|pir||T27022 hypothetical protein Y48E1B.3 -
Caenorhabditis elegans gi|3925263|emb|CAB07699.1|
Hypothetical protein Y48E1B.3 [Caenorhabditis elegans]
Length = 360
Score = 98.2 bits (243), Expect = 7e-20
Identities = 48/108 (44%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Frame = -1
Query: 511 DVPLLLDWTLQRQGTDGGFQGRPNKPSDTCYAFWIGAVLRILGGCNFVDKNAVREFLLAC 332
D+ L+ W +Q+Q D GF GR +KP D+CYAFWIGA L+IL + V K +REFL+ C
Sbjct: 242 DIDRLIRWAIQKQ--DIGFHGRAHKPDDSCYAFWIGATLKILNAYHLVSKQHLREFLMIC 299
Query: 331 QYKY-GGFSKFPEE--FPDLYHTYYGFSAFSLLEESGLKSLCSELGIT 197
Q+ + GGF K+PE + D+ HTY+ +A SLL E + + L ++
Sbjct: 300 QHPHIGGFCKYPEPGGYSDILHTYFSIAALSLLGEPAVNPVHPSLNVS 347
>gb|EAA12255.1| agCP10934 [Anopheles gambiae str. PEST]
Length = 432
Score = 89.4 bits (220), Expect = 3e-17
Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Frame = -1
Query: 499 LLDWTLQRQGTDGGFQGRPNKPSDTCYAFWIGAVLRILGGCNFVDKNAVREFLLACQ-YK 323
++ W + RQ GFQGRPNKP DTCY+FWI A L+IL A R+++L+ Q
Sbjct: 300 IIRWLVFRQ--QDGFQGRPNKPVDTCYSFWIAATLKILHAFELTSFQANRDYVLSTQDPT 357
Query: 322 YGGFSKFPEEFPDLYHTYYGFSAFSLLEESGLKSLCSELGIT 197
GGFSK+P+ + D +H+Y+G S L E GL+ + L I+
Sbjct: 358 VGGFSKWPQAYTDPFHSYFGLCGLSFLNEPGLQEVMPSLNIS 399
>gb|AAC46971.1| geranylgeranyl transferase beta-subunit type I
Length = 395
Score = 89.0 bits (219), Expect = 4e-17
Identities = 47/99 (47%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Frame = -1
Query: 490 WTLQRQGTDGGFQGRPNKPSDTCYAFWIGAVLRILGGCNFVDKNAVREFLLACQYK-YGG 314
W + RQ GFQGRPNKP DTCY+FWIGA L IL G D REF+L+ Q K GG
Sbjct: 241 WLIFRQMD--GFQGRPNKPVDTCYSFWIGASLCILNGFELTDYARNREFILSTQDKLIGG 298
Query: 313 FSKFPEEFPDLYHTYYGFSAFSLLEESGLKSLCSELGIT 197
F+K+P+ PD +HTY G + E GL + L ++
Sbjct: 299 FAKWPQATPDPFHTYLGLCGLAFTGEPGLSPVNPSLNMS 337
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,117,070
Number of Sequences: 1393205
Number of extensions: 9963413
Number of successful extensions: 23495
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 22607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23418
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
