Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004490A_C01 KMC004490A_c01
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1J93|A Chain A, Crystal Structure And Substrate Binding Mode... 281 7e-75
sp|Q42967|DCUP_TOBAC Uroporphyrinogen decarboxylase, chloroplast... 281 7e-75
sp|Q42855|DCUP_HORVU Uroporphyrinogen decarboxylase (UPD) gi|136... 275 5e-73
ref|NP_181581.1| putative uroporphyrinogen decarboxylase; protei... 270 1e-71
sp|O81220|DCUP_MAIZE Uroporphyrinogen decarboxylase, chloroplast... 270 2e-71
>pdb|1J93|A Chain A, Crystal Structure And Substrate Binding Modeling Of The
Uroporphyrinogen-Iii Decarboxylase From Nicotiana
Tabacum: Implications For The Catalytic Mechanism
Length = 353
Score = 281 bits (718), Expect = 7e-75
Identities = 135/152 (88%), Positives = 145/152 (94%)
Frame = -3
Query: 663 QADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKKTHPELPLILYASGSGGLLE 484
QAD+GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVD+VK THP LPLILYASGSGGLLE
Sbjct: 202 QADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLILYASGSGGLLE 261
Query: 483 RLALTGVDVVSLDWTVDMADGRRRLGPNITVQGNVDPGVLFGSKEIITDRIHDTVRKAGR 304
RL LTGVDVVSLDWTVDMADGRRRLGPN+ +QGNVDPGVLFGSKE IT+RI+DTV+KAG+
Sbjct: 262 RLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAGK 321
Query: 303 GKHILNLGHGIVVGTPEENVAHFFEVAKGIRY 208
GKHILNLGHGI VGTPEEN AHFFE+AKG+RY
Sbjct: 322 GKHILNLGHGIKVGTPEENFAHFFEIAKGLRY 353
>sp|Q42967|DCUP_TOBAC Uroporphyrinogen decarboxylase, chloroplast precursor (UPD)
gi|1362120|pir||S55732 uroporphyrinogen decarboxylase -
common tobacco gi|1009429|emb|CAA58040.1|
uroporphyrinogen decarboxylase [Nicotiana tabacum]
Length = 391
Score = 281 bits (718), Expect = 7e-75
Identities = 135/152 (88%), Positives = 145/152 (94%)
Frame = -3
Query: 663 QADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKKTHPELPLILYASGSGGLLE 484
QAD+GAQAVQIFDSWATELSPVDFEEFSLPYLKQIVD+VK THP LPLILYASGSGGLLE
Sbjct: 240 QADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLILYASGSGGLLE 299
Query: 483 RLALTGVDVVSLDWTVDMADGRRRLGPNITVQGNVDPGVLFGSKEIITDRIHDTVRKAGR 304
RL LTGVDVVSLDWTVDMADGRRRLGPN+ +QGNVDPGVLFGSKE IT+RI+DTV+KAG+
Sbjct: 300 RLPLTGVDVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAGK 359
Query: 303 GKHILNLGHGIVVGTPEENVAHFFEVAKGIRY 208
GKHILNLGHGI VGTPEEN AHFFE+AKG+RY
Sbjct: 360 GKHILNLGHGIKVGTPEENFAHFFEIAKGLRY 391
>sp|Q42855|DCUP_HORVU Uroporphyrinogen decarboxylase (UPD) gi|1362169|pir||S55733
uroporphyrinogen decarboxylase - barley
gi|1016347|emb|CAA58039.1| uroporphyrinogen
decarboxylase [Hordeum vulgare subsp. vulgare]
Length = 330
Score = 275 bits (702), Expect = 5e-73
Identities = 135/152 (88%), Positives = 143/152 (93%)
Frame = -3
Query: 663 QADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKKTHPELPLILYASGSGGLLE 484
QADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVD+VK+THP+LPLILYASGSGGLLE
Sbjct: 179 QADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKETHPDLPLILYASGSGGLLE 238
Query: 483 RLALTGVDVVSLDWTVDMADGRRRLGPNITVQGNVDPGVLFGSKEIITDRIHDTVRKAGR 304
RL LTGVDVVSLDWTVDMA+GR+RLG NI VQGNVDPGVLFGSKE IT RI+DTV+KAG
Sbjct: 239 RLPLTGVDVVSLDWTVDMAEGRKRLGSNIAVQGNVDPGVLFGSKEFITKRIYDTVQKAGS 298
Query: 303 GKHILNLGHGIVVGTPEENVAHFFEVAKGIRY 208
H+LNLGHGI VGTPEENVAHFFEVAKGIRY
Sbjct: 299 QGHVLNLGHGIKVGTPEENVAHFFEVAKGIRY 330
>ref|NP_181581.1| putative uroporphyrinogen decarboxylase; protein id: At2g40490.1,
supported by cDNA: gi_14334767 [Arabidopsis thaliana]
gi|6014937|sp|O22886|DCUP_ARATH Uroporphyrinogen
decarboxylase, chloroplast precursor (UPD)
gi|25291014|pir||B84830 probable uroporphyrinogen
decarboxylase [imported] - Arabidopsis thaliana
gi|2651307|gb|AAB87587.1| putative uroporphyrinogen
decarboxylase [Arabidopsis thaliana]
gi|23297097|gb|AAN13092.1| putative uroporphyrinogen
decarboxylase [Arabidopsis thaliana]
Length = 394
Score = 270 bits (690), Expect = 1e-71
Identities = 134/152 (88%), Positives = 141/152 (92%)
Frame = -3
Query: 663 QADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKKTHPELPLILYASGSGGLLE 484
QAD+GAQAVQIFDSWATELSPVDFEEFSLPYLKQIV+ VK+THP LPLILYASGSGGLLE
Sbjct: 243 QADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVEAVKQTHPNLPLILYASGSGGLLE 302
Query: 483 RLALTGVDVVSLDWTVDMADGRRRLGPNITVQGNVDPGVLFGSKEIITDRIHDTVRKAGR 304
RLA TGVDVVSLDWTVDMA+GR RLG +I VQGNVDPGVLFGSKE IT RIHDTV+KAGR
Sbjct: 303 RLARTGVDVVSLDWTVDMAEGRDRLGRDIAVQGNVDPGVLFGSKEFITSRIHDTVKKAGR 362
Query: 303 GKHILNLGHGIVVGTPEENVAHFFEVAKGIRY 208
KHILNLGHGI VGTPEENVAHFFEVA+ IRY
Sbjct: 363 DKHILNLGHGIKVGTPEENVAHFFEVAQEIRY 394
>sp|O81220|DCUP_MAIZE Uroporphyrinogen decarboxylase, chloroplast precursor (UPD)
gi|7436552|pir||T01653 uroporphyrinogen decarboxylase
(EC 4.1.1.37) - maize gi|3420233|gb|AAC31883.1|
uroporphyrinogen decarboxylase [Zea mays]
Length = 393
Score = 270 bits (689), Expect = 2e-71
Identities = 132/152 (86%), Positives = 141/152 (91%)
Frame = -3
Query: 663 QADNGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDTVKKTHPELPLILYASGSGGLLE 484
QADNGAQAVQIFDSWATELSP DFEEFSLPYLKQIVD+V++THP+LPLILYASGSGGLLE
Sbjct: 242 QADNGAQAVQIFDSWATELSPADFEEFSLPYLKQIVDSVRETHPDLPLILYASGSGGLLE 301
Query: 483 RLALTGVDVVSLDWTVDMADGRRRLGPNITVQGNVDPGVLFGSKEIITDRIHDTVRKAGR 304
RL LTGVDVVSLDWTVDMA+GR+RLG N VQGNVDPGVLFGSKE IT RI+DTV+KAG
Sbjct: 302 RLPLTGVDVVSLDWTVDMAEGRKRLGSNTAVQGNVDPGVLFGSKEFITRRIYDTVQKAGN 361
Query: 303 GKHILNLGHGIVVGTPEENVAHFFEVAKGIRY 208
H+LNLGHGI VGTPEENVAHFFEVAKGIRY
Sbjct: 362 VGHVLNLGHGIKVGTPEENVAHFFEVAKGIRY 393
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,650,525
Number of Sequences: 1393205
Number of extensions: 11583424
Number of successful extensions: 32420
Number of sequences better than 10.0: 165
Number of HSP's better than 10.0 without gapping: 31179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32192
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
