Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004485A_C01 KMC004485A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197406.1| putative protein; protein id: At5g19050.1, supp... 186 2e-46
dbj|BAC16407.1| hypothetical protein~predicted by GeneMark.hmm e... 178 3e-44
gb|EAA28599.1| hypothetical protein [Neurospora crassa] 44 0.002
ref|NP_593992.1| hypothetical protein; sequence orphan [Schizosa... 40 0.019
ref|XP_163193.1| hypothetical protein XP_163193 [Mus musculus] 33 1.8
>ref|NP_197406.1| putative protein; protein id: At5g19050.1, supported by cDNA:
gi_18377687 [Arabidopsis thaliana]
gi|14250874|emb|CAC39243.1| hypothetical protein
[Arabidopsis thaliana] gi|18377688|gb|AAL66994.1|
unknown protein [Arabidopsis thaliana]
gi|23296801|gb|AAN13173.1| unknown protein [Arabidopsis
thaliana]
Length = 361
Score = 186 bits (471), Expect = 2e-46
Identities = 86/105 (81%), Positives = 96/105 (90%)
Frame = -1
Query: 555 HSLCSYNGDDDLFSSDLSDDQLRMRLGHMSSTHCQVIFSMADEYVPEYVDKKALVERLCR 376
HSLC+Y GDDD+FSSDLSDDQL+ RLGHM++T CQVIFSM DEYVP+YVDKKALV RL +
Sbjct: 257 HSLCAYMGDDDMFSSDLSDDQLKTRLGHMANTPCQVIFSMGDEYVPDYVDKKALVNRLSK 316
Query: 375 AMGGAEKVEIEYGNHSLSNRVEEAVQAIIDFLKREGPQGWDDPWN 241
AMGGAEKVEIE+GNHSLSNRV EAVQAII F+KREGP GWDDPW+
Sbjct: 317 AMGGAEKVEIEHGNHSLSNRVHEAVQAIIGFVKREGPSGWDDPWS 361
>dbj|BAC16407.1| hypothetical protein~predicted by GeneMark.hmm etc. [Oryza sativa
(japonica cultivar-group)]
Length = 99
Score = 178 bits (452), Expect = 3e-44
Identities = 80/98 (81%), Positives = 94/98 (95%)
Frame = -1
Query: 534 GDDDLFSSDLSDDQLRMRLGHMSSTHCQVIFSMADEYVPEYVDKKALVERLCRAMGGAEK 355
GDDD+FSSDLS+DQLR RLGHMS+T CQVIFSM DEYVPEYVDK+ALV+RLCRA+G AEK
Sbjct: 2 GDDDMFSSDLSEDQLRQRLGHMSTTQCQVIFSMGDEYVPEYVDKEALVDRLCRALGNAEK 61
Query: 354 VEIEYGNHSLSNRVEEAVQAIIDFLKREGPQGWDDPWN 241
VEIE+GNH+LSNRV+EAV+AI+DF+KREGP+GWDDPW+
Sbjct: 62 VEIEWGNHALSNRVQEAVRAIVDFVKREGPKGWDDPWS 99
>gb|EAA28599.1| hypothetical protein [Neurospora crassa]
Length = 337
Score = 43.5 bits (101), Expect = 0.002
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Frame = -1
Query: 552 SLCSYNGDDDLFSSDLSDDQLRMRLGHMSSTHCQVIFSMADEYVPEY---VDKKALVERL 382
SL S+ GDDD FSSDL D++L G +S ++ S DE+VPE+ VD A +R
Sbjct: 216 SLASFGGDDDYFSSDLPDEKLAEIWGKVSMP-TLILPSENDEHVPEWIDVVDMMAKWKRF 274
Query: 381 CR 376
C+
Sbjct: 275 CK 276
>ref|NP_593992.1| hypothetical protein; sequence orphan [Schizosaccharomyces pombe]
gi|13624908|emb|CAC36902.1| hypothetical protein;
sequence orphan [Schizosaccharomyces pombe]
Length = 316
Score = 40.0 bits (92), Expect = 0.019
Identities = 30/93 (32%), Positives = 41/93 (43%), Gaps = 7/93 (7%)
Frame = -1
Query: 549 LCSYNGDDDLFSSDLSDDQLRMRLGHM-----SSTHCQVIFSMA--DEYVPEYVDKKALV 391
L G+DD FSSDLS D G++ S+ H Q+I M+ DE+V DK L+
Sbjct: 204 LTDVRGNDDFFSSDLSADDFAKTFGNLKEISGSTAHSQLILLMSERDEFVSPSTDKAQLL 263
Query: 390 ERLCRAMGGAEKVEIEYGNHSLSNRVEEAVQAI 292
R E + N SLS + A +
Sbjct: 264 NRF------RESIRPTTSNSSLSGIIPGATHNV 290
>ref|XP_163193.1| hypothetical protein XP_163193 [Mus musculus]
Length = 350
Score = 33.5 bits (75), Expect = 1.8
Identities = 21/92 (22%), Positives = 44/92 (47%)
Frame = -1
Query: 516 SSDLSDDQLRMRLGHMSSTHCQVIFSMADEYVPEYVDKKALVERLCRAMGGAEKVEIEYG 337
SS + D++ ++ +S H Q I ++A P+Y+ + + L ++G V++ Y
Sbjct: 51 SSTIWDEEFKL-----TSLHSQ-IHTIAPHPCPQYISMQDNEQTLADSIGSRVCVKVRYK 104
Query: 336 NHSLSNRVEEAVQAIIDFLKREGPQGWDDPWN 241
H R+ + ++R GP+ W+ W+
Sbjct: 105 GHGTERRLYFSFS-----VERHGPESWEWRWH 131
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,463,699
Number of Sequences: 1393205
Number of extensions: 10711429
Number of successful extensions: 41444
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 30126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38653
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
