Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004480A_C01 KMC004480A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T07179 probable alcohol dehydrogenase (EC 1.1.1.1) (clone C... 150 9e-36
gb|AAM67260.1| alcohol dehydrogenase-like protein [Arabidopsis t... 119 4e-26
dbj|BAC10189.1| contains EST C99136(E10204)~similar to alcohol d... 116 2e-25
ref|NP_173660.1| alcohol dehydrogenase ADH, putative; protein id... 115 6e-25
pir||T49118 probable alcohol dehydrogenase (EC 1.1.1.1) AT4g2211... 114 7e-25
>pir||T07179 probable alcohol dehydrogenase (EC 1.1.1.1) (clone CP67) - potato
gi|1039355|emb|CAA63093.1| alcohol dehydrogenase
[Solanum tuberosum]
Length = 377
Score = 150 bits (380), Expect = 9e-36
Identities = 71/143 (49%), Positives = 101/143 (69%)
Frame = -1
Query: 591 KGEAFGMTHFINPGDSGKSLSELVKELSGGVGVDYSIECTGAPPLLTESVAATKVGTGKT 412
KGE FGMT FINP +S S+SE++K+++ G+GVDY ECTG P +L E++ A+K+G G
Sbjct: 234 KGELFGMTDFINPKESMTSVSEMIKDVTEGLGVDYVFECTGIPSMLNEAIEASKLGIGTI 293
Query: 411 IAVGMAPEPVVPFGLLALLFGRTLKGSAFGGIKTTTDLSIIANKCLKQEFPLQELFTHEV 232
+ +G F L+ LL GRTLKGS +GGI+ +DL I ++C +E L EL TH++
Sbjct: 294 VVIGAGHGLTREFNLVPLLCGRTLKGSIYGGIRLHSDLPAILHRCATKEIQLNELITHQI 353
Query: 231 PLSDVDKAFELLKQPDCVKIIIK 163
L++++++FELLK P CVKIIIK
Sbjct: 354 SLTEINQSFELLKDPHCVKIIIK 376
>gb|AAM67260.1| alcohol dehydrogenase-like protein [Arabidopsis thaliana]
Length = 384
Score = 119 bits (297), Expect = 4e-26
Identities = 65/147 (44%), Positives = 93/147 (63%), Gaps = 2/147 (1%)
Frame = -1
Query: 594 EKGEAFGMTHFINPGDSG-KSLSELVKELSGGVGVDYSIECTGAPPLLTESVAATKVGTG 418
E G+ FG T FINP G K +SE++KE++GG GVDYS EC G P LLTE+ ++T+ G+G
Sbjct: 237 ELGKKFGFTSFINPTLCGEKKISEVIKEMTGG-GVDYSFECVGLPSLLTEAFSSTRTGSG 295
Query: 417 KTIAVGMAPE-PVVPFGLLALLFGRTLKGSAFGGIKTTTDLSIIANKCLKQEFPLQELFT 241
KT+ +G+ V G LL GR + GS FGG+K D+ I+ + LK+E L T
Sbjct: 296 KTVVLGIDKHLTPVSLGSFDLLRGRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDSFIT 355
Query: 240 HEVPLSDVDKAFELLKQPDCVKIIIKM 160
HE+ +++KAF+LL Q ++ I+ M
Sbjct: 356 HELKFEEINKAFDLLVQGKSLRCILWM 382
>dbj|BAC10189.1| contains EST C99136(E10204)~similar to alcohol dehydrogenase [Oryza
sativa (japonica cultivar-group)]
Length = 390
Score = 116 bits (291), Expect = 2e-25
Identities = 61/146 (41%), Positives = 95/146 (64%), Gaps = 3/146 (2%)
Frame = -1
Query: 588 GEAFGMTHFINPGDSG-KSLSELVKELSGGVGVDYSIECTGAPPLLTESVAATKVGTGKT 412
G+ GMT FINP D+G K++SE++KE++GG G DY EC G+ ++ E+ +T+ G GKT
Sbjct: 236 GKRLGMTDFINPNDTGGKTVSEVIKEMTGGGGADYCFECIGSTSVMAEAFQSTRNGWGKT 295
Query: 411 IAVGMAPEPVVPFGLLA--LLFGRTLKGSAFGGIKTTTDLSIIANKCLKQEFPLQELFTH 238
I +G++ P + + +L GR++ GS FGGIK D+ ++A K L +E L+E TH
Sbjct: 296 ILLGVSGNKA-PISIPSHEILRGRSVIGSLFGGIKPKNDIPMLAQKYLDKELELEEFITH 354
Query: 237 EVPLSDVDKAFELLKQPDCVKIIIKM 160
E+ ++++AFELL Q ++ II M
Sbjct: 355 EMGFEEINRAFELLTQGKSIRCIIWM 380
>ref|NP_173660.1| alcohol dehydrogenase ADH, putative; protein id: At1g22440.1
[Arabidopsis thaliana] gi|25283044|pir||E86357 alcohol
dehydrogenase (EC 1.-.-.-) [similarity] - Arabidopsis
thaliana gi|6587844|gb|AAF18533.1|AC006551_19 Very
similar to alcohol dehydrogenase [Arabidopsis thaliana]
Length = 386
Score = 115 bits (287), Expect = 6e-25
Identities = 60/147 (40%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Frame = -1
Query: 594 EKGEAFGMTHFINPGDSG-KSLSELVKELSGGVGVDYSIECTGAPPLLTESVAATKVGTG 418
E G+ FG+T F+NP G K++SE+++E++ VG DYS EC G L+ E+ +T+ G+G
Sbjct: 239 EIGKRFGITDFVNPALCGEKTISEVIREMTD-VGADYSFECIGLASLMEEAFKSTRPGSG 297
Query: 417 KTIAVGMAPEPV-VPFGLLALLFGRTLKGSAFGGIKTTTDLSIIANKCLKQEFPLQELFT 241
KTI +GM + + + G LL GRT+ G+ FGG+K D+ I+ ++ LK+E L++L T
Sbjct: 298 KTIVLGMEQKALPISLGSYDLLRGRTVCGTLFGGLKPKLDIPILVDRYLKKELNLEDLIT 357
Query: 240 HEVPLSDVDKAFELLKQPDCVKIIIKM 160
HE+ +++KAF LL + + ++ II M
Sbjct: 358 HELSFEEINKAFHLLAEGNSIRCIIWM 384
>pir||T49118 probable alcohol dehydrogenase (EC 1.1.1.1) AT4g22110 [similarity]
- Arabidopsis thaliana gi|2961356|emb|CAA18114.1|
alcohol dehydrogenase like protein [Arabidopsis
thaliana] gi|7269056|emb|CAB79166.1| alcohol
dehydrogenase like protein [Arabidopsis thaliana]
Length = 378
Score = 114 bits (286), Expect = 7e-25
Identities = 63/147 (42%), Positives = 93/147 (62%), Gaps = 2/147 (1%)
Frame = -1
Query: 594 EKGEAFGMTHFINPGDSGKS-LSELVKELSGGVGVDYSIECTGAPPLLTESVAATKVGTG 418
E G+ FG T FIN G++ +SE++KE++GG GVDYS EC G P LLTE+ ++T+ G+G
Sbjct: 231 ELGKKFGFTDFINSTLCGENKISEVIKEMTGG-GVDYSFECVGLPSLLTEAFSSTRTGSG 289
Query: 417 KTIAVGMAPE-PVVPFGLLALLFGRTLKGSAFGGIKTTTDLSIIANKCLKQEFPLQELFT 241
KT+ +G+ V G LL GR + GS FGG+K D+ I+ + LK+E L T
Sbjct: 290 KTVVLGIDKHLTPVSLGSFDLLRGRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDSFIT 349
Query: 240 HEVPLSDVDKAFELLKQPDCVKIIIKM 160
HE+ +++KAF+LL Q ++ I+ M
Sbjct: 350 HELKFEEINKAFDLLVQGKSLRCILWM 376
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,765,842
Number of Sequences: 1393205
Number of extensions: 12528908
Number of successful extensions: 36691
Number of sequences better than 10.0: 758
Number of HSP's better than 10.0 without gapping: 34500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35945
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
