Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004477A_C02 KMC004477A_c02
(494 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704473.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.0
ref|NP_440189.1| ferredoxin-sulfite reductase [Synechocystis sp.... 31 6.6
ref|NP_705169.1| hypothetical protein [Plasmodium falciparum 3D7... 31 8.6
ref|NP_704623.1| hypothetical protein [Plasmodium falciparum 3D7... 31 8.6
ref|XP_146392.2| similar to hypothetical protein FLJ38281 [Homo ... 31 8.6
>ref|NP_704473.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499212|emb|CAD51292.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1346
Score = 31.6 bits (70), Expect = 5.0
Identities = 13/47 (27%), Positives = 29/47 (61%)
Frame = +2
Query: 335 KSTNYQVINITILHEKKQCS*SHICYINHNNVAAIRVQHQKNVHDLV 475
K+ + + I IT+++++K HICY + NN+ ++ + N++D +
Sbjct: 748 KTKDNKKIAITLVYKRKDNH--HICYGDRNNITSMNMSRMDNINDCI 792
>ref|NP_440189.1| ferredoxin-sulfite reductase [Synechocystis sp. PCC 6803]
gi|2499191|sp|P72854|SIR_SYNY3 Sulfite reductase
(Ferredoxin) gi|7432743|pir||S74718 sulfite reductase
(ferredoxin) (EC 1.8.7.1) - Synechocystis sp. (strain
PCC 6803) gi|1651943|dbj|BAA16869.1| ferredoxin-sulfite
reductase [Synechocystis sp. PCC 6803]
Length = 635
Score = 31.2 bits (69), Expect = 6.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +2
Query: 98 IRTFRKYMQNYVNPPQSRLGPLTCWSYALNLGW 196
+ FRK ++ Y+ P PL W Y LGW
Sbjct: 330 VEKFRKQVETYMGKPFQSFKPLPAWRYQDYLGW 362
>ref|NP_705169.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615414|emb|CAD52405.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2756
Score = 30.8 bits (68), Expect = 8.6
Identities = 16/46 (34%), Positives = 24/46 (51%)
Frame = +2
Query: 293 VWVTYNHTRQNQLTKSTNYQVINITILHEKKQCS*SHICYINHNNV 430
V+ YN+ +N S N + N + H+K C +HIC + NNV
Sbjct: 1679 VYCVYNNMNENS-QHSKNNNIENYAV-HKKHACDKNHICSTHQNNV 1722
>ref|NP_704623.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504983|emb|CAD51766.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 352
Score = 30.8 bits (68), Expect = 8.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -2
Query: 472 QVMYVFLMLYPYGCNVIVIDVAYMTSRTLFFLMQYCD--VYDLIVSALCQLILPSMIIGY 299
Q +Y+FL + Y NVI+ +AY F+ Y D Y+ I+ ++ I+ S + Y
Sbjct: 192 QTLYIFLNVLVYAINVILASLAY-------FVKAYFDYIYYNYIIESIVDYIIASAFLYY 244
>ref|XP_146392.2| similar to hypothetical protein FLJ38281 [Homo sapiens] [Mus
musculus]
Length = 478
Score = 30.8 bits (68), Expect = 8.6
Identities = 15/46 (32%), Positives = 25/46 (53%)
Frame = +2
Query: 62 DKYLTNSFTSHAIRTFRKYMQNYVNPPQSRLGPLTCWSYALNLGWP 199
+KY+T + S ++RTF++YM+ +V GP C G+P
Sbjct: 139 EKYVTKQYNSDSLRTFQRYMRTHVVN-----GPCECEVCLKYFGFP 179
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,415,545
Number of Sequences: 1393205
Number of extensions: 8277004
Number of successful extensions: 16812
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16810
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
