Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004472A_C01 KMC004472A_c01
(654 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00093643.1| hypothetical protein [Novosphingobium aromatic... 33 4.4
ref|NP_795939.1| RIKEN cDNA 4930563A03 gene [Mus musculus] gi|26... 32 7.5
gb|AAL68238.1| LD43328p [Drosophila melanogaster] 32 9.8
ref|NP_610435.2| CG8213-PA [Drosophila melanogaster] gi|21645579... 32 9.8
pir||T03930 gene GUT15 protein - common tobacco gi|2275256|gb|AA... 32 9.8
>gb|ZP_00093643.1| hypothetical protein [Novosphingobium aromaticivorans]
Length = 538
Score = 32.7 bits (73), Expect = 4.4
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 301 VEASITSSSGIIFHWINVFLIDPSPNLQKIPP 206
V+ + ++S ++ W+NVFL++PS N PP
Sbjct: 457 VDCTSAATSQVVKKWVNVFLVEPSLNRGSAPP 488
>ref|NP_795939.1| RIKEN cDNA 4930563A03 gene [Mus musculus] gi|26325728|dbj|BAC26618.1|
unnamed protein product [Mus musculus]
Length = 1267
Score = 32.0 bits (71), Expect = 7.5
Identities = 23/97 (23%), Positives = 44/97 (44%), Gaps = 9/97 (9%)
Frame = -3
Query: 394 FHIHKF--------SPPKDNLQLQYRIIATYEVTDYRSEVEASITSSSGIIFHWINVFLI 239
FHI+K+ P N+++ ++ +Y R+EV +++HWIN+ L
Sbjct: 1155 FHINKYLVEEICVLDPTASNVEVNVELVTSYIQAHSRTEVWNFRNIVIELLYHWINICLT 1214
Query: 238 DPSPNL-QKIPPKPSHMQDQSTIYQLRFQRQHELQPR 131
N+ Q + P+ Q++ +Y R ++ PR
Sbjct: 1215 LIELNMRQDVSIIPAIAQEECHLYLCHILR--KINPR 1249
>gb|AAL68238.1| LD43328p [Drosophila melanogaster]
Length = 1674
Score = 31.6 bits (70), Expect = 9.8
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 21/109 (19%)
Frame = -3
Query: 439 QTLNSISIEVIHPDNFHIHKFS---------PPKDNLQLQ------------YRIIATYE 323
QT I+ + + P NFH+HK S P D+ +Q + I+ T E
Sbjct: 285 QTTQKINKQPVQPPNFHVHKHSVTINSPSSPPQNDDFVMQVLSTLPPEHADDHHIVFTTE 344
Query: 322 VTDYRSEVEASITSSSGIIFHWINVFLIDPSPNLQKIPPKPSHMQDQST 176
V + TSS F ++ QK PKP+ M Q T
Sbjct: 345 VPTKITSGLQDQTSSESNSFEEVS----STPAATQKPKPKPTQMPTQKT 389
>ref|NP_610435.2| CG8213-PA [Drosophila melanogaster] gi|21645579|gb|AAF59009.2|
CG8213-PA [Drosophila melanogaster]
Length = 1599
Score = 31.6 bits (70), Expect = 9.8
Identities = 29/109 (26%), Positives = 41/109 (37%), Gaps = 21/109 (19%)
Frame = -3
Query: 439 QTLNSISIEVIHPDNFHIHKFS---------PPKDNLQLQ------------YRIIATYE 323
QT I+ + + P NFH+HK S P D+ +Q + I+ T E
Sbjct: 255 QTTQKINKQPVQPPNFHVHKHSVTINSPSSPPQNDDFVMQVLSTLPPEHADDHHIVFTTE 314
Query: 322 VTDYRSEVEASITSSSGIIFHWINVFLIDPSPNLQKIPPKPSHMQDQST 176
V + TSS F ++ QK PKP+ M Q T
Sbjct: 315 VPTKITSGLQDQTSSESNSFEEVS----STPAATQKPKPKPTQMPTQKT 359
>pir||T03930 gene GUT15 protein - common tobacco gi|2275256|gb|AAD09831.1|
unknown [Nicotiana tabacum]
Length = 78
Score = 31.6 bits (70), Expect = 9.8
Identities = 28/59 (47%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 480 MSGALAWQVTIS**KSFVGFG-GDRTG-LPGISPCVACALFLVPLLLFLCRSTLLRYHQ 650
M GALAWQVTI S FG GD TG LPG V+ L LF T +YHQ
Sbjct: 1 MMGALAWQVTIPNKVSIFCFGRGDGTGILPGAPLFVSSRLLFSS--LFPRYYTQDQYHQ 57
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 588,961,520
Number of Sequences: 1393205
Number of extensions: 13225111
Number of successful extensions: 36742
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 35487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36730
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
