Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004465A_C01 KMC004465A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO14886.1| G glycoprotein [Human respiratory syncytial virus A] 34 1.3
gb|AAO14885.1| G glycoprotein [Human respiratory syncytial virus A] 34 1.3
gb|AAC36326.1| attachment protein [Human respiratory syncytial v... 34 1.3
gb|AAC36328.1| attachment protein [Human respiratory syncytial v... 34 1.3
sp|P20895|VGLG_HRSVL MAJOR SURFACE GLYCOPROTEIN G (ATTACHMENT GL... 33 2.2
>gb|AAO14886.1| G glycoprotein [Human respiratory syncytial virus A]
Length = 114
Score = 33.9 bits (76), Expect = 1.3
Identities = 22/58 (37%), Positives = 32/58 (54%)
Frame = -3
Query: 516 PGAQTAQYPSRKGTNVKGTRGAQKPVRDKPKLKGDGDVNVTKSVPQPTVM*LQTSLVT 343
PG +T P+RK T +K T+ KP KPK +V TKS +PT+ +T++ T
Sbjct: 11 PGKKTTTKPTRKPT-IKTTKKDLKPQTTKPK-----EVLTTKSTEKPTINTTKTNIRT 62
>gb|AAO14885.1| G glycoprotein [Human respiratory syncytial virus A]
Length = 114
Score = 33.9 bits (76), Expect = 1.3
Identities = 22/58 (37%), Positives = 32/58 (54%)
Frame = -3
Query: 516 PGAQTAQYPSRKGTNVKGTRGAQKPVRDKPKLKGDGDVNVTKSVPQPTVM*LQTSLVT 343
PG +T P+RK T +K T+ KP KPK +V TKS +PT+ +T++ T
Sbjct: 11 PGKKTTTKPTRKPT-IKTTKKDLKPQTTKPK-----EVLTTKSTEKPTINTTKTNIGT 62
>gb|AAC36326.1| attachment protein [Human respiratory syncytial virus]
Length = 297
Score = 33.9 bits (76), Expect = 1.3
Identities = 22/58 (37%), Positives = 32/58 (54%)
Frame = -3
Query: 516 PGAQTAQYPSRKGTNVKGTRGAQKPVRDKPKLKGDGDVNVTKSVPQPTVM*LQTSLVT 343
PG +T P+RK T +K T+ KP KPK +V TKS +PT+ +T++ T
Sbjct: 194 PGKKTTTKPTRKPT-IKTTKKDLKPQTTKPK-----EVLTTKSTEKPTINTTKTNIRT 245
>gb|AAC36328.1| attachment protein [Human respiratory syncytial virus]
Length = 297
Score = 33.9 bits (76), Expect = 1.3
Identities = 22/58 (37%), Positives = 32/58 (54%)
Frame = -3
Query: 516 PGAQTAQYPSRKGTNVKGTRGAQKPVRDKPKLKGDGDVNVTKSVPQPTVM*LQTSLVT 343
PG +T P+RK T +K T+ KP KPK +V TKS +PT+ +T++ T
Sbjct: 194 PGKKTTTKPTRKPT-IKTTKKDLKPQTTKPK-----EVLTTKSTEKPTINTTKTNIRT 245
>sp|P20895|VGLG_HRSVL MAJOR SURFACE GLYCOPROTEIN G (ATTACHMENT GLYCOPROTEIN G)
gi|74962|pir||MGNZRL major surface glycoprotein G -
human respiratory syncytial virus (strain Long)
gi|333941|gb|AAA47411.1| attachement glycoprotein (G)
Length = 298
Score = 33.1 bits (74), Expect = 2.2
Identities = 20/58 (34%), Positives = 31/58 (52%)
Frame = -3
Query: 516 PGAQTAQYPSRKGTNVKGTRGAQKPVRDKPKLKGDGDVNVTKSVPQPTVM*LQTSLVT 343
PG +T P++K T K T+ KP KPK +V TK +PT+ +T+++T
Sbjct: 194 PGKKTTTKPTKKPT-FKTTKKDHKPQTTKPK-----EVPTTKPTEEPTINTTKTNIIT 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,310,883
Number of Sequences: 1393205
Number of extensions: 11068857
Number of successful extensions: 24033
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 23267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24020
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
