Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004459A_C01 KMC004459A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190512.2| arginine/serine-rich splicing factor (atSRp34),... 115 3e-25
gb|AAG52185.1|AC012329_12 putative splicing factor; 53460-55514 ... 115 3e-25
dbj|BAC16007.1| putative pre-mRNA splicing factor SF2 (SR1 prote... 100 2e-20
gb|AAM91541.1| SF2/ASF-like splicing modulator Srp30, putative [... 98 9e-20
gb|AAD52613.1| splicing factor SR1E [Arabidopsis thaliana] 98 9e-20
>ref|NP_190512.2| arginine/serine-rich splicing factor (atSRp34), putative; protein
id: At3g49430.1 [Arabidopsis thaliana]
Length = 341
Score = 115 bits (289), Expect = 3e-25
Identities = 70/103 (67%), Positives = 75/103 (71%), Gaps = 9/103 (8%)
Frame = -1
Query: 593 TNYDDMKYAIRKLDDTEFKNPWARGYIRVKKFESRRSR----SLSRSRSPKRVRSRSLDR 426
TNYDDMKYAIRKLDDTEF+NPWARG+IRVKK+ES RSR S SRSRS R RSR R
Sbjct: 167 TNYDDMKYAIRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGR 226
Query: 425 SVSRSRSRSRSASPIK--SSRPR---SRSKSRSRSASPPQVPS 312
S SRSRS SRS SP K S PR SRS S+SRS SP + S
Sbjct: 227 SHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKS 269
>gb|AAG52185.1|AC012329_12 putative splicing factor; 53460-55514 [Arabidopsis thaliana]
Length = 295
Score = 115 bits (289), Expect = 3e-25
Identities = 70/103 (67%), Positives = 75/103 (71%), Gaps = 9/103 (8%)
Frame = -1
Query: 593 TNYDDMKYAIRKLDDTEFKNPWARGYIRVKKFESRRSR----SLSRSRSPKRVRSRSLDR 426
TNYDDMKYAIRKLDDTEF+NPWARG+IRVKK+ES RSR S SRSRS R RSR R
Sbjct: 167 TNYDDMKYAIRKLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGR 226
Query: 425 SVSRSRSRSRSASPIK--SSRPR---SRSKSRSRSASPPQVPS 312
S SRSRS SRS SP K S PR SRS S+SRS SP + S
Sbjct: 227 SHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSPDKKKS 269
>dbj|BAC16007.1| putative pre-mRNA splicing factor SF2 (SR1 protein) [Oryza sativa
(japonica cultivar-group)]
Length = 380
Score = 99.8 bits (247), Expect = 2e-20
Identities = 59/104 (56%), Positives = 68/104 (64%), Gaps = 10/104 (9%)
Frame = -1
Query: 593 TNYDDMKYAIRKLDDTEFKNPWARGYIRVKKFESRRSRSLSRSRSPKRVRSRSLDRS--- 423
TNYDDMKYAIRKLDD+EFKN +++ YIRVK+++ +RSRS SRSRS R RS S RS
Sbjct: 219 TNYDDMKYAIRKLDDSEFKNAFSKAYIRVKEYDGKRSRSYSRSRSRSRGRSYSRSRSPRS 278
Query: 422 -------VSRSRSRSRSASPIKSSRPRSRSKSRSRSASPPQVPS 312
S RS SRS S SSR RS SK RS S SP + S
Sbjct: 279 GGKSPKGKSSRRSASRSRSRSASSRSRSESKGRSPSRSPARSQS 322
>gb|AAM91541.1| SF2/ASF-like splicing modulator Srp30, putative [Arabidopsis
thaliana]
Length = 285
Score = 97.8 bits (242), Expect = 9e-20
Identities = 55/92 (59%), Positives = 69/92 (74%), Gaps = 3/92 (3%)
Frame = -1
Query: 593 TNYDDMKYAIRKLDDTEFKNPWARGYIRVKKFESRR-SRSLSRSRSPKRVRSRSLDRSV- 420
T Y+DMKYA++KLDDTEF+N ++ GY+RV++++SR+ SRS SR RS + RSRS RSV
Sbjct: 164 TCYEDMKYALKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVS 223
Query: 419 -SRSRSRSRSASPIKSSRPRSRSKSRSRSASP 327
SRSRSRSRS SP S RS +KS SRS P
Sbjct: 224 RSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGP 255
>gb|AAD52613.1| splicing factor SR1E [Arabidopsis thaliana]
Length = 270
Score = 97.8 bits (242), Expect = 9e-20
Identities = 55/92 (59%), Positives = 69/92 (74%), Gaps = 3/92 (3%)
Frame = -1
Query: 593 TNYDDMKYAIRKLDDTEFKNPWARGYIRVKKFESRR-SRSLSRSRSPKRVRSRSLDRSV- 420
T Y+DMKYA++KLDDTEF+N ++ GY+RV++++SR+ SRS SR RS + RSRS RSV
Sbjct: 168 TCYEDMKYALKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVS 227
Query: 419 -SRSRSRSRSASPIKSSRPRSRSKSRSRSASP 327
SRSRSRSRS SP S RS +KS SRS P
Sbjct: 228 RSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGP 259
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,850,209
Number of Sequences: 1393205
Number of extensions: 10506963
Number of successful extensions: 63876
Number of sequences better than 10.0: 1230
Number of HSP's better than 10.0 without gapping: 36956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49419
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
