Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004458A_C01 KMC004458A_c01
(642 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05363 phosphogluconate dehydrogenase (decarboxylating) (EC... 198 6e-50
ref|NP_186885.1| 6-phosphogluconate dehydrogenase, putative; pro... 188 5e-47
dbj|BAA93024.1| ESTs D24970(R2869),AU031961(R2869) correspond to... 184 1e-45
pir||S57786 phosphogluconate dehydrogenase (decarboxylating) (EC... 183 2e-45
pir||T01659 phosphogluconate dehydrogenase (decarboxylating) (EC... 182 3e-45
>pir||T05363 phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44) -
soybean gi|2529229|dbj|BAA22812.1| 6-phosphogluconate
dehydrogenase [Glycine max]
Length = 511
Score = 198 bits (503), Expect = 6e-50
Identities = 98/122 (80%), Positives = 108/122 (88%), Gaps = 3/122 (2%)
Frame = -3
Query: 640 KAYDRNPELANLLVDPEFAKEIIDRQSAWRRVVCLAINSGISTPGMSASLAYFDTYRRDR 461
+AY+RNP LANLLVDPEFAKEIID QSAWRRVVCLAINSGISTPGMSASLAYFDTYRR+R
Sbjct: 387 QAYERNPNLANLLVDPEFAKEIIDYQSAWRRVVCLAINSGISTPGMSASLAYFDTYRRER 446
Query: 460 LPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKLAQQSRS---*ITVFQPIRTSNKCNVF 290
LPANLVQAQRDYFGAHTYER+D+EGS+HTEWFKLA+QS+ I+ Q NKCN+F
Sbjct: 447 LPANLVQAQRDYFGAHTYERVDIEGSYHTEWFKLAKQSKKLDYCISANQDF--PNKCNIF 504
Query: 289 CS 284
CS
Sbjct: 505 CS 506
>ref|NP_186885.1| 6-phosphogluconate dehydrogenase, putative; protein id:
At3g02360.1, supported by cDNA: 34412., supported by
cDNA: gi_15983433 [Arabidopsis thaliana]
gi|10092176|gb|AAG12595.1|AC068900_1 6-phosphogluconate
dehydrogenase, putative; 13029-14489 [Arabidopsis
thaliana] gi|15983434|gb|AAL11585.1|AF424591_1
AT3g02360/F11A12_104 [Arabidopsis thaliana]
gi|21592941|gb|AAM64891.1| 6-phosphogluconate
dehydrogenase, putative [Arabidopsis thaliana]
gi|25141203|gb|AAN73296.1| At3g02360/F11A12_104
[Arabidopsis thaliana]
Length = 486
Score = 188 bits (478), Expect = 5e-47
Identities = 89/99 (89%), Positives = 97/99 (97%)
Frame = -3
Query: 640 KAYDRNPELANLLVDPEFAKEIIDRQSAWRRVVCLAINSGISTPGMSASLAYFDTYRRDR 461
+AYDRN ELANLLVDPEFAKEII+RQSAWRRVVCLAINSGISTPGMSASLAYFD+YRR+R
Sbjct: 387 QAYDRNAELANLLVDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSASLAYFDSYRRER 446
Query: 460 LPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKLAQQSR 344
LPANLVQAQRDYFGAHTYER D+EGSFHTEWFK+A+QS+
Sbjct: 447 LPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKIARQSK 485
>dbj|BAA93024.1| ESTs D24970(R2869),AU031961(R2869) correspond to a region of the
predicted gene.~Similar to Zea mays putative cytosolic
6-phosphogluconate dehydrogenase (AF061838) [Oryza
sativa (japonica cultivar-group)]
gi|19569141|gb|AAL92029.1|AF486280_1 cytosolic
6-phosphogluconate dehydrogenase [Oryza sativa]
Length = 480
Score = 184 bits (466), Expect = 1e-45
Identities = 84/99 (84%), Positives = 96/99 (96%)
Frame = -3
Query: 640 KAYDRNPELANLLVDPEFAKEIIDRQSAWRRVVCLAINSGISTPGMSASLAYFDTYRRDR 461
KAYDRN +LANLLVDPEFA+EI+DRQ+AWRRVVCLAIN+G+STPGMSASLAYFD+YRRDR
Sbjct: 381 KAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVCLAINNGVSTPGMSASLAYFDSYRRDR 440
Query: 460 LPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKLAQQSR 344
LPANLVQAQRDYFGAHTYER+DM GSFHTEWFK+A+ ++
Sbjct: 441 LPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKIARAAK 479
>pir||S57786 phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44) -
alfalfa gi|603221|gb|AAB41553.1| 6-phosphogluconate
dehydrogenase
Length = 486
Score = 183 bits (464), Expect = 2e-45
Identities = 85/99 (85%), Positives = 96/99 (96%)
Frame = -3
Query: 640 KAYDRNPELANLLVDPEFAKEIIDRQSAWRRVVCLAINSGISTPGMSASLAYFDTYRRDR 461
+AYDRNP LANLLVDPEFAKEII+RQ+AWRRVV L++NSGIS PGMSASLAYFD+YRR+R
Sbjct: 387 QAYDRNPNLANLLVDPEFAKEIIERQTAWRRVVSLSVNSGISLPGMSASLAYFDSYRRER 446
Query: 460 LPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKLAQQSR 344
LPANLVQAQRDYFGAHTYER+D+EGS+HTEWFKLA+QSR
Sbjct: 447 LPANLVQAQRDYFGAHTYERVDIEGSYHTEWFKLAKQSR 485
>pir||T01659 phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44)
pdh2, cytosolic - maize gi|3342802|gb|AAC27703.1|
putative cytosolic 6-phosphogluconate dehydrogenase [Zea
mays]
Length = 482
Score = 182 bits (463), Expect = 3e-45
Identities = 84/96 (87%), Positives = 94/96 (97%)
Frame = -3
Query: 640 KAYDRNPELANLLVDPEFAKEIIDRQSAWRRVVCLAINSGISTPGMSASLAYFDTYRRDR 461
KAYDRNP LA+LLVDPEFA+EI+DRQ+AWRRVVCLAIN+G+STPGMSASLAYFD+YRRDR
Sbjct: 382 KAYDRNPGLASLLVDPEFAQEIMDRQAAWRRVVCLAINNGVSTPGMSASLAYFDSYRRDR 441
Query: 460 LPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKLAQ 353
LPANLVQAQRDYFGAHTYER+DM GSFHTEWFK+A+
Sbjct: 442 LPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKIAR 477
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,768,521
Number of Sequences: 1393205
Number of extensions: 11077170
Number of successful extensions: 30281
Number of sequences better than 10.0: 317
Number of HSP's better than 10.0 without gapping: 29139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30206
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
