Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004447A_C01 KMC004447A_c01
(461 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62636.1| putative PRL1 associated protein [Arabidopsis tha... 64 8e-10
ref|NP_200680.1| putative PRL1 associated protein; protein id: A... 64 8e-10
gb|AAG31656.1| PRLI-interacting factor N [Arabidopsis thaliana] 64 8e-10
dbj|BAB32709.1| putative PRLI-interacting factor N [Oryza sativa... 59 3e-08
ref|NP_571688.1| CUG triplet repeat, RNA-binding protein 1 [Dani... 33 1.9
>gb|AAM62636.1| putative PRL1 associated protein [Arabidopsis thaliana]
Length = 519
Score = 63.9 bits (154), Expect = 8e-10
Identities = 31/45 (68%), Positives = 39/45 (85%), Gaps = 1/45 (2%)
Frame = -2
Query: 460 LKPSIIKLLDKEGVEWSEENRGTVLIKL-AGCREFSFLDTDSDSD 329
+K S++KLL++EGV + EENRGT+LIKL G REFSFLDT+SDSD
Sbjct: 474 VKQSVVKLLEREGVRYCEENRGTLLIKLDGGSREFSFLDTESDSD 518
>ref|NP_200680.1| putative PRL1 associated protein; protein id: At5g58720.1,
supported by cDNA: 150336., supported by cDNA:
gi_17065351 [Arabidopsis thaliana]
gi|11358659|pir||T51367 probable PRL1 associated protein
[imported] - Arabidopsis thaliana
gi|3201477|emb|CAA06808.1| putative PRL1 associated
protein [Arabidopsis thaliana]
gi|8843792|dbj|BAA97340.1| PRL1 associated protein-like
[Arabidopsis thaliana] gi|17065352|gb|AAL32830.1| PRL1
associated protein-like [Arabidopsis thaliana]
gi|21387179|gb|AAM47993.1| PRL1-associated protein-like
protein [Arabidopsis thaliana]
Length = 519
Score = 63.9 bits (154), Expect = 8e-10
Identities = 31/45 (68%), Positives = 39/45 (85%), Gaps = 1/45 (2%)
Frame = -2
Query: 460 LKPSIIKLLDKEGVEWSEENRGTVLIKL-AGCREFSFLDTDSDSD 329
+K S++KLL++EGV + EENRGT+LIKL G REFSFLDT+SDSD
Sbjct: 474 VKQSVVKLLEREGVRYCEENRGTLLIKLDGGSREFSFLDTESDSD 518
>gb|AAG31656.1| PRLI-interacting factor N [Arabidopsis thaliana]
Length = 187
Score = 63.9 bits (154), Expect = 8e-10
Identities = 31/45 (68%), Positives = 39/45 (85%), Gaps = 1/45 (2%)
Frame = -2
Query: 460 LKPSIIKLLDKEGVEWSEENRGTVLIKL-AGCREFSFLDTDSDSD 329
+K S++KLL++EGV + EENRGT+LIKL G REFSFLDT+SDSD
Sbjct: 142 VKQSVVKLLEREGVRYCEENRGTLLIKLDGGSREFSFLDTESDSD 186
>dbj|BAB32709.1| putative PRLI-interacting factor N [Oryza sativa (japonica
cultivar-group)] gi|20804402|dbj|BAB92100.1| putative
PRLI-interacting factor N [Oryza sativa (japonica
cultivar-group)]
Length = 529
Score = 58.5 bits (140), Expect = 3e-08
Identities = 24/44 (54%), Positives = 36/44 (81%)
Frame = -2
Query: 460 LKPSIIKLLDKEGVEWSEENRGTVLIKLAGCREFSFLDTDSDSD 329
+K ++ +L++KEGVEW EEN GT++++L G RE+ FL+ DSDSD
Sbjct: 486 IKRAVAELVEKEGVEWHEENAGTIVLRLGGPREYRFLEHDSDSD 529
>ref|NP_571688.1| CUG triplet repeat, RNA-binding protein 1 [Danio rerio]
gi|7670538|dbj|BAA95119.1| zebrafish Bruno-like [Danio
rerio]
Length = 501
Score = 32.7 bits (73), Expect = 1.9
Identities = 22/75 (29%), Positives = 36/75 (47%)
Frame = +3
Query: 216 QMYMSMSQLALIYLSGYLNLVQKADKSAVSLYKLDQLLSLSLSVSRKLNSLHPASLINTV 395
Q+ M QL + G L + ++LY QLL S S LN+LHP S +N +
Sbjct: 200 QLQQQMQQLNAASMWGNLTGLNSLGPQYLALYL--QLLQQSASSGNALNNLHPMSGLNAM 257
Query: 396 PRFSSLHSTPSLSRS 440
++L + S +++
Sbjct: 258 QNLAALAAAASATQA 272
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 338,238,146
Number of Sequences: 1393205
Number of extensions: 6074638
Number of successful extensions: 14172
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 13856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14157
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
