Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004446A_C01 KMC004446A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197516.1| ribosomal protein L7Ae-like; protein id: At5g20... 99 3e-20
gb|AAM64816.1| Ribosomal protein L7Ae-like [Arabidopsis thaliana] 99 3e-20
ref|NP_193969.1| Ribosomal protein L7Ae - like; protein id: At4g... 99 3e-20
ref|NP_192997.1| Ribosomal protein L7Ae -like; protein id: At4g1... 96 2e-19
ref|NP_524714.1| hoi-polloi CG3949-PA gi|13431749|sp|Q9U3Z7|NHPX... 87 2e-16
>ref|NP_197516.1| ribosomal protein L7Ae-like; protein id: At5g20160.1, supported by
cDNA: 30288., supported by cDNA: gi_15081641, supported
by cDNA: gi_20334835 [Arabidopsis thaliana]
gi|15081642|gb|AAK82476.1| AT5g20160/F5O24_50
[Arabidopsis thaliana] gi|20334836|gb|AAM16174.1|
AT5g20160/F5O24_50 [Arabidopsis thaliana]
gi|21592608|gb|AAM64557.1| ribosomal protein L7Ae-like
[Arabidopsis thaliana]
Length = 128
Score = 99.0 bits (245), Expect = 3e-20
Identities = 49/52 (94%), Positives = 50/52 (95%)
Frame = -3
Query: 376 NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI 221
NVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LKDAIEKLLI
Sbjct: 77 NVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKLLI 128
>gb|AAM64816.1| Ribosomal protein L7Ae-like [Arabidopsis thaliana]
Length = 128
Score = 99.0 bits (245), Expect = 3e-20
Identities = 49/52 (94%), Positives = 50/52 (95%)
Frame = -3
Query: 376 NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI 221
NVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LKDAIEKLLI
Sbjct: 77 NVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKLLI 128
>ref|NP_193969.1| Ribosomal protein L7Ae - like; protein id: At4g22380.1 [Arabidopsis
thaliana] gi|21554922|gb|AAM63731.1| Ribosomal protein
L7Ae-like [Arabidopsis thaliana]
Length = 128
Score = 99.0 bits (245), Expect = 3e-20
Identities = 49/52 (94%), Positives = 50/52 (95%)
Frame = -3
Query: 376 NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI 221
NVPYVFVPSKQALGRACGVTRPVIACSVT+NE SQLKSQIQ LKDAIEKLLI
Sbjct: 77 NVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKSQIQHLKDAIEKLLI 128
>ref|NP_192997.1| Ribosomal protein L7Ae -like; protein id: At4g12600.1, supported by
cDNA: 33381., supported by cDNA: gi_13605584, supported
by cDNA: gi_15777868 [Arabidopsis thaliana]
gi|25295060|pir||C85135 Ribosomal protein L7Ae-like
[imported] - Arabidopsis thaliana
gi|5823571|emb|CAB53753.1| Ribosomal protein L7Ae-like
[Arabidopsis thaliana] gi|7267962|emb|CAB78303.1|
Ribosomal protein L7Ae-like [Arabidopsis thaliana]
gi|13605585|gb|AAK32786.1|AF361618_1 AT4g12600/T1P17_190
[Arabidopsis thaliana] gi|15777869|gb|AAL05895.1|
AT4g12600/T1P17_190 [Arabidopsis thaliana]
Length = 128
Score = 96.3 bits (238), Expect = 2e-19
Identities = 48/52 (92%), Positives = 49/52 (93%)
Frame = -3
Query: 376 NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI 221
NVPYVFVPSKQALGRAC VTRPVIACSVT+NE SQLKSQIQ LKDAIEKLLI
Sbjct: 77 NVPYVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLKDAIEKLLI 128
>ref|NP_524714.1| hoi-polloi CG3949-PA gi|13431749|sp|Q9U3Z7|NHPX_DROME NHP2-like
protein (Hoi-polloi protein)
gi|6636516|gb|AAF20209.1|AF208396_1 Hoi-polloi
[Drosophila melanogaster] gi|10728689|gb|AAF52798.2|
CG3949-PA [Drosophila melanogaster]
Length = 127
Score = 86.7 bits (213), Expect = 2e-16
Identities = 40/52 (76%), Positives = 47/52 (89%)
Frame = -3
Query: 376 NVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI 221
NVPYVFV SKQALGRACGV+RP++ACSVTTNEGSQLKSQI ++ IE+LL+
Sbjct: 76 NVPYVFVRSKQALGRACGVSRPIVACSVTTNEGSQLKSQITSIQQEIERLLV 127
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,623,729
Number of Sequences: 1393205
Number of extensions: 7120441
Number of successful extensions: 13046
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 12823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13041
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
