Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004443A_C01 KMC004443A_c01
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567422.1| hypothetical protein; protein id: At4g14103.1 [... 62 6e-09
ref|NP_177996.1| hypothetical protein; protein id: At1g78750.1 [... 60 2e-08
dbj|BAB09888.1| gene_id:MIK19.15~pir||T02649~similar to unknown ... 60 3e-08
pir||B71402 hypothetical protein - Arabidopsis thaliana gi|22447... 59 4e-08
pir||T47797 hypothetical protein F17J16.200 - Arabidopsis thalia... 59 4e-08
>ref|NP_567422.1| hypothetical protein; protein id: At4g14103.1 [Arabidopsis
thaliana] gi|22136642|gb|AAM91640.1| unknown protein
[Arabidopsis thaliana]
Length = 381
Score = 62.0 bits (149), Expect = 6e-09
Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 7/145 (4%)
Frame = -3
Query: 612 SFENFVNATILARDERQPITRF*LLYESTVSLEGSDLVH--DWLNTVMPRRIENLEICIP 439
SF +FV+ +LA P+ +F L +G D V W+N V+ R + +L++ +
Sbjct: 69 SFMDFVDR-VLALQGNSPLHKFSLKIG-----DGIDPVRIIPWINNVLERGVSDLDLHLN 122
Query: 438 PLSRGI-GLKIYSCRTLVVLKLKGYPLGVYVSSHVE---LPSLKSLHLEKVHFVDFQSFL 271
S + ++Y C+TLV LKL+ G+Y + VE LP LK+L++E HF + L
Sbjct: 123 LESEFLLPSQVYLCKTLVWLKLR---FGLYPTIDVEDVHLPKLKTLYIEATHFEEHGVGL 179
Query: 270 -KLICGCPLLEDLEAGTVSYLDTSF 199
KL+ GCP+LEDL +S+ F
Sbjct: 180 TKLLSGCPMLEDLVLDDISWFIWDF 204
>ref|NP_177996.1| hypothetical protein; protein id: At1g78750.1 [Arabidopsis
thaliana] gi|25406566|pir||E96816 hypothetical protein
F9K20.21 [imported] - Arabidopsis thaliana
gi|3834319|gb|AAC83035.1| Similar to gi|2244754 heat
shock transcription factor HSF30 homolog from
Arabidopsis thaliana chromosome 4 contig gb|Z97335
Length = 458
Score = 60.5 bits (145), Expect = 2e-08
Identities = 41/118 (34%), Positives = 58/118 (48%), Gaps = 10/118 (8%)
Frame = -3
Query: 504 LVHDWLNTVMPRRI----------ENLEICIPPLSRGIGLKIYSCRTLVVLKLKGYPLGV 355
L+ W+N+V+ R++ +N E +PP +Y+C TLV L L G L +
Sbjct: 115 LIRRWINSVVSRKVKYLGVLDDSCDNYEFEMPPT-------LYTCETLVYLTLDG--LSL 165
Query: 354 YVSSHVELPSLKSLHLEKVHFVDFQSFLKLICGCPLLEDLEAGTVSYLDTSFDQEFRF 181
V LPSLK LHL V F D + LI CP+LE+L ++ SF +F F
Sbjct: 166 ASPKFVSLPSLKELHLSIVKFADHMALETLISQCPVLENLN------INRSFCDDFEF 217
>dbj|BAB09888.1| gene_id:MIK19.15~pir||T02649~similar to unknown protein
[Arabidopsis thaliana]
Length = 372
Score = 59.7 bits (143), Expect = 3e-08
Identities = 36/98 (36%), Positives = 55/98 (55%), Gaps = 2/98 (2%)
Frame = -3
Query: 522 SLEGSDLVHDWLNTVMPRRIENLEICIPPLSRGIGL--KIYSCRTLVVLKLKGYPLGVYV 349
SL+ DL W+ + R + L I + + + L +Y+C++LV LKL G + + V
Sbjct: 58 SLQPKDL-KSWVRIAVSRCVRELSISLHDTTAAVSLPSSLYTCKSLVTLKLYGKKVLLDV 116
Query: 348 SSHVELPSLKSLHLEKVHFVDFQSFLKLICGCPLLEDL 235
V LPSLK+L LE++ + D S L+ CP+LEDL
Sbjct: 117 PRTVFLPSLKTLQLERLRYSDEDSLRLLLSYCPVLEDL 154
>pir||B71402 hypothetical protein - Arabidopsis thaliana
gi|2244765|emb|CAB10188.1| hypothetical protein
[Arabidopsis thaliana] gi|7268114|emb|CAB78451.1|
hypothetical protein [Arabidopsis thaliana]
Length = 1047
Score = 59.3 bits (142), Expect = 4e-08
Identities = 38/103 (36%), Positives = 60/103 (57%), Gaps = 5/103 (4%)
Frame = -3
Query: 492 WLNTVMPRRIENLEICIPPLSRGI-GLKIYSCRTLVVLKLKGYPLGVYVSSHVE---LPS 325
W+N V+ R + +L++ + S + ++Y C+TLV LKL+ G+Y + VE LP
Sbjct: 773 WINNVLERGVSDLDLHLNLESEFLLPSQVYLCKTLVWLKLR---FGLYPTIDVEDVHLPK 829
Query: 324 LKSLHLEKVHFVDFQSFL-KLICGCPLLEDLEAGTVSYLDTSF 199
LK+L++E HF + L KL+ GCP+LEDL +S+ F
Sbjct: 830 LKTLYIEATHFEEHGVGLTKLLSGCPMLEDLVLDDISWFIWDF 872
Score = 55.5 bits (132), Expect = 6e-07
Identities = 43/140 (30%), Positives = 73/140 (51%), Gaps = 2/140 (1%)
Frame = -3
Query: 612 SFENFVNATILARDERQPITRF*LLYESTVSLEGSDLVHDWLNTVMPRRIENLEICIPPL 433
SF +FV+ +LA P+ +F L V D + W+N V+ R + +L++ +
Sbjct: 324 SFMDFVDR-VLALQGNSPLHKFSLKIGDGVE---PDRIIPWINNVLERGVSDLDLHVYME 379
Query: 432 SRGI-GLKIYSCRTLVVLKLKGYPLGVYVSSHVELPSLKSLHLEKVHFVDFQSFL-KLIC 259
+ + +++ +TLV LKL YPL + V LP LK+L+++ +F + L KL+
Sbjct: 380 TEFVFPSEMFLSKTLVRLKLMLYPLLEF--EDVYLPKLKTLYIDSCYFEKYGIGLTKLLS 437
Query: 258 GCPLLEDLEAGTVSYLDTSF 199
GCP+LEDL + + F
Sbjct: 438 GCPILEDLVLDDIPWCTWDF 457
>pir||T47797 hypothetical protein F17J16.200 - Arabidopsis thaliana (fragment)
gi|7529758|emb|CAB86943.1| putative protein [Arabidopsis
thaliana]
Length = 827
Score = 59.3 bits (142), Expect = 4e-08
Identities = 48/131 (36%), Positives = 65/131 (48%), Gaps = 5/131 (3%)
Frame = -3
Query: 612 SFENFVNATILARDERQPITRF*LLYESTVSLEGSDLVHDWLNTVMPRRIENLEICIPPL 433
SF +FV+ IL P+ +F L D V W++ V+ R + +L + I
Sbjct: 577 SFPDFVDR-ILDLQGNSPLDKFSLKMVDDHDPVDPDCVAPWIHKVLVRGVSDLHLVIDMN 635
Query: 432 S-RGIGLKIYSCRTLVVLKLK---GYPLGVYVSSHVELPSLKSLHLEKVHFVDFQ-SFLK 268
+ KI+ TLV L LK G P+ V HV LP LK+LHLE V F + F K
Sbjct: 636 EWTSLPAKIFLTETLVKLTLKIRDGPPIDV---KHVHLPKLKTLHLESVMFDEEDIGFSK 692
Query: 267 LICGCPLLEDL 235
L+ GCP LE+L
Sbjct: 693 LLSGCPELEEL 703
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,003,726
Number of Sequences: 1393205
Number of extensions: 10676074
Number of successful extensions: 22911
Number of sequences better than 10.0: 173
Number of HSP's better than 10.0 without gapping: 22224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22856
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
