Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004408A_C01 KMC004408A_c01
(974 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177174.1| matrix metalloproteinase, putative; protein id:... 98 2e-19
ref|NP_173824.1| putative metalloproteinase; protein id: At1g241... 84 3e-15
ref|NP_176205.1| metalloproteinase, putative; protein id: At1g59... 74 3e-12
gb|AAK55453.1|AC069300_8 putative metalloproteinase [Oryza sativ... 73 8e-12
emb|CAA77093.1| MtN9 [Medicago truncatula] 71 2e-11
>ref|NP_177174.1| matrix metalloproteinase, putative; protein id: At1g70170.1
[Arabidopsis thaliana] gi|25406033|pir||E96724
hypothetical protein F20P5.11 [imported] - Arabidopsis
thaliana gi|2194124|gb|AAB61099.1| Similar to Glycine
metalloendoproteinase (gb|U63725). [Arabidopsis
thaliana]
Length = 378
Score = 97.8 bits (242), Expect = 2e-19
Identities = 67/183 (36%), Positives = 91/183 (49%), Gaps = 28/183 (15%)
Frame = -3
Query: 972 AFDRWSNETSLNFTETATFDASDIKIAFVKWD-GKG----GRVGAAYTNYSMHAGGMFLD 808
AF RWS+ T+LNFT + +F SDI I F D G G G +G +S +G LD
Sbjct: 192 AFGRWSDVTALNFTLSESFSTSDITIGFYTGDHGDGEPFDGVLGTLAHAFSPPSGKFHLD 251
Query: 807 IDEQYV----------------LLNVVMHEIGHLLGLGHSYEKESIMYPIVM--REKIDF 682
DE +V L +V +HEIGHLLGLGHS +ESIMYP + + K+D
Sbjct: 252 ADENWVVSGDLDSFLSVTAAVDLESVAVHEIGHLLGLGHSSVEESIMYPTITTGKRKVDL 311
Query: 681 TDDDRKRIQKVTGNSNNGGTSASSSGTTTDSSSGGGHDSVWQ-----RNLILGFAFMVFG 517
T+DD + IQ + G + N + S TT GG + W+ R+ I+ G
Sbjct: 312 TNDDVEGIQYLYGANPNFNGTTSPPSTTKHQRDTGGFSAAWRIDGSSRSTIVSLLLSTVG 371
Query: 516 IFL 508
+ L
Sbjct: 372 LVL 374
>ref|NP_173824.1| putative metalloproteinase; protein id: At1g24140.1 [Arabidopsis
thaliana] gi|7488435|pir||T00643 zinc metalloproteinase
homolog F3I6.6 - Arabidopsis thaliana
gi|2829864|gb|AAC00572.1| similar to zinc
metalloproteinases [Arabidopsis thaliana]
Length = 377
Score = 84.3 bits (207), Expect = 3e-15
Identities = 63/186 (33%), Positives = 87/186 (45%), Gaps = 31/186 (16%)
Frame = -3
Query: 972 AFDRWSNETSLNFTETATFDASDIKIAFVK--------WDGKGGRVGAAYTNYSMH---- 829
AF RW T L FT F SDI I F +DG + A++ + H
Sbjct: 189 AFTRWEEVTPLTFTRVERFSTSDISIGFYSGEHGDGEPFDGPMRTLAHAFSPPTGHFHLD 248
Query: 828 ----------AGGMFLDIDEQYVLLNVVMHEIGHLLGLGHSYEKESIMYPIVM--REKID 685
G F+ + E L +V +HEIGHLLGLGHS + SIMYP + R K+D
Sbjct: 249 GEENWIVSGEGGDGFISVSEAVDLESVAVHEIGHLLGLGHSSVEGSIMYPTIRTGRRKVD 308
Query: 684 FTDDDRKRIQKVTG-NSNNGGTSASSSGT----TTDSSSGGGHDSVWQ--RNLILGFAFM 526
T DD + +Q + G N N G+ + T T DS + G D NL+ + ++
Sbjct: 309 LTTDDVEGVQYLYGANPNFNGSRSPPPSTQQRDTGDSGAPGRSDGSRSVLTNLLQYYFWI 368
Query: 525 VFGIFL 508
+FG+FL
Sbjct: 369 IFGLFL 374
>ref|NP_176205.1| metalloproteinase, putative; protein id: At1g59970.1 [Arabidopsis
thaliana] gi|4249376|gb|AAD14473.1|AAD14473 Strong
similarity to gi|2829864 F3I6.6 zinc metalloproteinase
homolog from Arabidopsis thaliana BAC gb|AC002396. EST
gb|Z26412 comes from this gene
Length = 360
Score = 74.3 bits (181), Expect = 3e-12
Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 25/180 (13%)
Frame = -3
Query: 972 AFDRWSNETSLNFTETATFDASDIKIAFVKWD-GKG----GRVGAAYTNYSMHAGGMFLD 808
AF RW+ T LNFT + + +DI I F + G G G +G S G + LD
Sbjct: 180 AFTRWAEVTPLNFTRSESILRADIVIGFFSGEHGDGEPFDGAMGTLAHASSPPTGMLHLD 239
Query: 807 IDEQYVLLN------------------VVMHEIGHLLGLGHSYEKESIMYPIVM--REKI 688
DE +++ N V +HEIGHLLGLGHS +++IM+P + K+
Sbjct: 240 GDEDWLISNGEISRRILPVTTVVDLESVAVHEIGHLLGLGHSSVEDAIMFPAISGGDRKV 299
Query: 687 DFTDDDRKRIQKVTGNSNNGGTSASSSGTTTDSSSGGGHDSVWQRNLILGFAFMVFGIFL 508
+ DD + IQ + G + NG S + +S S GG R ++ + + IFL
Sbjct: 300 ELAKDDIEGIQHLYGGNPNG--DGGGSKPSRESQSTGGDSVRRWRGWMISLSSIATCIFL 357
>gb|AAK55453.1|AC069300_8 putative metalloproteinase [Oryza sativa (japonica cultivar-group)]
Length = 355
Score = 72.8 bits (177), Expect = 8e-12
Identities = 50/152 (32%), Positives = 75/152 (48%), Gaps = 23/152 (15%)
Frame = -3
Query: 972 AFDRWSNETSLNFTETATFDASDIKIAF--------VKWDGKGGRVGAAYTNYSMHAGGM 817
AF RW+ + F ET ++A+DIK+ F V +DG G +G A+ S G +
Sbjct: 184 AFARWARTIPVGFVETDDYEAADIKVGFYAGNHGDGVPFDGPLGILGHAF---SPKNGRL 240
Query: 816 FLDIDEQYV-------------LLNVVMHEIGHLLGLGHSYEKESIMYPIV--MREKIDF 682
LD E + L +V HEIGH+LGLGHS ++MYP + +K+
Sbjct: 241 HLDASEHWAVDFDVDATASAIDLESVATHEIGHVLGLGHSASPRAVMYPSIKPREKKVRL 300
Query: 681 TDDDRKRIQKVTGNSNNGGTSASSSGTTTDSS 586
T DD + +Q + G++ S+ S T+ SS
Sbjct: 301 TVDDVEGVQALYGSNPQFSLSSLSEQGTSSSS 332
>emb|CAA77093.1| MtN9 [Medicago truncatula]
Length = 191
Score = 71.2 bits (173), Expect = 2e-11
Identities = 54/160 (33%), Positives = 79/160 (48%), Gaps = 11/160 (6%)
Frame = -3
Query: 972 AFDRWSNETS-LNFTETATFDASDIKIAFVKWDGKGGRVGAAYTN---YSMHAGGMFLDI 805
AF RWS T L F+E ++D +DIKI F V + ++ + + L+
Sbjct: 31 AFTRWSQTTRVLKFSEATSYDDADIKIGFYNISYNSKEVIDVVVSDFFINLRSFTIRLEA 90
Query: 804 DEQYVLLNVVMHEIGHLLGLGHSYEKESIMYPIVM---REKIDFTDDDRKRIQKVTGNSN 634
+ + L V MH+IGHLLGL HS + ESIMYP ++ ++K+ T D + IQ++
Sbjct: 91 SKVWDLETVAMHQIGHLLGLDHSSDVESIMYPTIVPLHQKKVQITVSDNQAIQQLYTKQT 150
Query: 633 NGGTSA----SSSGTTTDSSSGGGHDSVWQRNLILGFAFM 526
N SG +SSSG +L LGFAF+
Sbjct: 151 NQDRDELGFFDYSGDFFESSSG------LLNSLSLGFAFV 184
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 863,661,545
Number of Sequences: 1393205
Number of extensions: 20152955
Number of successful extensions: 67263
Number of sequences better than 10.0: 354
Number of HSP's better than 10.0 without gapping: 54350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64643
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 55742331432
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
